Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G053300.2 | Wheat | nucleus | 95.05 | 98.05 |
| TraesCS4A01G261600.1 | Wheat | nucleus | 94.74 | 97.09 |
| HORVU4Hr1G008820.1 | Barley | nucleus | 92.63 | 92.34 |
| Zm00001d033825_P001 | Maize | nucleus | 67.26 | 70.76 |
| EER93546 | Sorghum | nucleus | 67.58 | 70.63 |
| Zm00001d013391_P006 | Maize | nucleus | 66.95 | 69.66 |
| GSMUA_Achr3P30500_001 | Banana | nucleus | 34.95 | 35.02 |
| GSMUA_Achr7P26780_001 | Banana | nucleus | 33.58 | 34.83 |
| CDX76281 | Canola | nucleus | 29.89 | 29.46 |
| Bra011533.1-P | Field mustard | nucleus | 28.63 | 29.18 |
| CDY46250 | Canola | nucleus | 29.05 | 29.14 |
| CDX75433 | Canola | nucleus | 28.53 | 28.98 |
| AT4G34430.4 | Thale cress | nucleus | 29.89 | 28.8 |
| Solyc01g109510.2.1 | Tomato | nucleus | 28.53 | 28.68 |
| PGSC0003DMT400001865 | Potato | nucleus | 28.21 | 28.36 |
| KRH24488 | Soybean | nucleus | 29.47 | 27.56 |
| KRH29482 | Soybean | nucleus | 29.89 | 27.13 |
| VIT_03s0063g02410.t01 | Wine grape | nucleus | 28.21 | 26.2 |
| Os03t0722100-01 | Rice | cytosol, nucleus | 13.79 | 24.49 |
| TraesCS4B01G097500.1 | Wheat | cytosol, mitochondrion, nucleus | 10.74 | 20.9 |
| TraesCS6B01G195400.1 | Wheat | plastid | 10.84 | 20.89 |
| TraesCS5B01G119800.1 | Wheat | nucleus | 17.16 | 20.55 |
| TraesCS2B01G356600.1 | Wheat | nucleus | 11.47 | 19.57 |
| TraesCS4B01G097600.1 | Wheat | nucleus | 4.0 | 16.67 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.60 | MapMan:12.4.2.1 | Gene3D:3.30.60.90 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008270 | InterPro:Homeobox-like_sf |
| InterPro:IPR000433 | InterPro:IPR007526 | InterPro:IPR017884 | InterPro:IPR036388 | PFAM:PF00249 | PFAM:PF00569 |
| PFAM:PF04433 | PFAM:PF16495 | ScanProsite:PS01357 | PFscan:PS50135 | PFscan:PS50934 | PFscan:PS51293 |
| PANTHER:PTHR12802 | PANTHER:PTHR12802:SF62 | InterPro:SANT/Myb | InterPro:SANT_dom | SMART:SM00291 | SMART:SM00717 |
| InterPro:SMARCC_C | SUPFAM:SSF46689 | SUPFAM:SSF57850 | InterPro:SWIRM | EnsemblPlantsGene:TraesCS4B01G053000 | EnsemblPlants:TraesCS4B01G053000.2 |
| InterPro:WH-like_DNA-bd_sf | InterPro:Znf_ZZ | TIGR:cd00167 | TIGR:cd02336 | SEG:seg | : |
Description
No Description!
Coordinates
chr4B:+:41778096..41783357
Molecular Weight (calculated)
102590.0 Da
IEP (calculated)
4.566
GRAVY (calculated)
-0.711
Length
950 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPKPQPAAH GDGAPAEAPR RRGGGGKRKA SGSSFTPSKR HAKERNAAFH APSHMLHSGP LTRAARQSPH KLSTAPADAA PAASVPGGSG PGEGAAIRPD
101: EVQTPAEETP LVDEGFEAVR SRGAGVHVVP TFAGWFSWKE IHQVEKQTLP SFFNGKSEKR TPEIYSGIRN SIMMKFHANP QLQLEPKDLA ELSVGEVDAR
201: QEVFDFLDHW GLINFHPFPP AGLEESKPEE SQSDSHNEEK ASLIEKLFKF EPVQSYMIPL PNKGEGEIPV PLPTLLPDPV LVEDVIAAAE PSVEYHCNSC
301: SVDCSGKRYH CRTQADFDLC SNCYNEAKFD AGMSKTDFIL MDSTEVSGAR GTSWTDEETL LLLEALEIFG GKWTEIAEHV ATKTKTQCML HFLQMQIEDR
401: FHDGDDIHQN IHESTEQALV EKGTPEVPEK METEEKVEGK DTKDEKPSEK TEGNHTEEKT EEGSVVENKD AKNSGGADSV TIPNVDEPKP SSDTDIAKEN
501: SVNLDTSEKN APDDAIDISG ENASNDAIDI LKSAFEAAGN FPGHEGSFAD AGNPVMALAA FLAGLVEDDS ATTSCCSSLK AISEDSPALQ LASRHCYILE
601: DPPSDLKDIF VTVSNTNKDE DQAKGEDQAK DEDMVIDSTG NEKKDINVKE DNTVSVEKQN SPSISPKDHK ESDTKNVSCD DEAPTVEPKS NKAKETDDPI
701: PLVDKSASND TKVPSSSTKD SVAPENNANG CGLSASQEVV AGSTTCATNP ELLKDKPSSE VEPDDDSPSQ GKMELNKTED AVAAPTAVQE DEKTHTLRNG
801: RLEEPNSAEN VPADGEMVSR VTAEHNDSLT RLKRAAATAV SAAAAKAKLL AEQEEDQIRR LAALVVEKLL QKTEAKMSLF ADVEHVALRT REYTEKTRKK
901: LLMERNAIIA ARMGALPSRP NQQGAAGNRL PPGYGAPAVR PPNAMPRPSS
101: EVQTPAEETP LVDEGFEAVR SRGAGVHVVP TFAGWFSWKE IHQVEKQTLP SFFNGKSEKR TPEIYSGIRN SIMMKFHANP QLQLEPKDLA ELSVGEVDAR
201: QEVFDFLDHW GLINFHPFPP AGLEESKPEE SQSDSHNEEK ASLIEKLFKF EPVQSYMIPL PNKGEGEIPV PLPTLLPDPV LVEDVIAAAE PSVEYHCNSC
301: SVDCSGKRYH CRTQADFDLC SNCYNEAKFD AGMSKTDFIL MDSTEVSGAR GTSWTDEETL LLLEALEIFG GKWTEIAEHV ATKTKTQCML HFLQMQIEDR
401: FHDGDDIHQN IHESTEQALV EKGTPEVPEK METEEKVEGK DTKDEKPSEK TEGNHTEEKT EEGSVVENKD AKNSGGADSV TIPNVDEPKP SSDTDIAKEN
501: SVNLDTSEKN APDDAIDISG ENASNDAIDI LKSAFEAAGN FPGHEGSFAD AGNPVMALAA FLAGLVEDDS ATTSCCSSLK AISEDSPALQ LASRHCYILE
601: DPPSDLKDIF VTVSNTNKDE DQAKGEDQAK DEDMVIDSTG NEKKDINVKE DNTVSVEKQN SPSISPKDHK ESDTKNVSCD DEAPTVEPKS NKAKETDDPI
701: PLVDKSASND TKVPSSSTKD SVAPENNANG CGLSASQEVV AGSTTCATNP ELLKDKPSSE VEPDDDSPSQ GKMELNKTED AVAAPTAVQE DEKTHTLRNG
801: RLEEPNSAEN VPADGEMVSR VTAEHNDSLT RLKRAAATAV SAAAAKAKLL AEQEEDQIRR LAALVVEKLL QKTEAKMSLF ADVEHVALRT REYTEKTRKK
901: LLMERNAIIA ARMGALPSRP NQQGAAGNRL PPGYGAPAVR PPNAMPRPSS
001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSADAEG NDDNSHKDDQ PEEKSKKAEE VSLNSDDREM PDTDTGKETQ DSVSEEKQPG SRTENSTTKL DAVQEKRSSK PVTTDNSEKP VDIICPSQDK
701: CSGKELQEPL KDGNKLSSEN KDASQSTVSQ SAADASQPEA SRDVEMKDTL QSEKDPEDVV KTVGEKVQLA KEEGANDVLS TPDKSVSQQP IGSASAPENG
801: TAGGNPNIEG KKEKDICEGT KDKYNIEKLK RAAISAISAA AVKAKNLAKQ EEDQIRQLSG SLIEKQLHKL EAKLSIFNEA ESLTMRVREQ LERSRQRLYH
901: ERAQIIAARL GVPPSMSSKA SLPTNRIAAN FANVAQRPPM GMAFPRPPMP RPPGFPVPGS FVAATTMTGS SDPSPGSDNV SSV
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSADAEG NDDNSHKDDQ PEEKSKKAEE VSLNSDDREM PDTDTGKETQ DSVSEEKQPG SRTENSTTKL DAVQEKRSSK PVTTDNSEKP VDIICPSQDK
701: CSGKELQEPL KDGNKLSSEN KDASQSTVSQ SAADASQPEA SRDVEMKDTL QSEKDPEDVV KTVGEKVQLA KEEGANDVLS TPDKSVSQQP IGSASAPENG
801: TAGGNPNIEG KKEKDICEGT KDKYNIEKLK RAAISAISAA AVKAKNLAKQ EEDQIRQLSG SLIEKQLHKL EAKLSIFNEA ESLTMRVREQ LERSRQRLYH
901: ERAQIIAARL GVPPSMSSKA SLPTNRIAAN FANVAQRPPM GMAFPRPPMP RPPGFPVPGS FVAATTMTGS SDPSPGSDNV SSV
Arabidopsis Description
CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.