Factsheet for VIT_03s0063g02410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001865	Potato	nucleus	39.0	42.22
KRH24488	Soybean	nucleus	40.86	41.14
Solyc01g109510.2.1	Tomato	nucleus	37.73	40.85
KRH29482	Soybean	nucleus	41.15	40.21
AT4G34430.4	Thale cress	nucleus	36.66	38.03
GSMUA_Achr7P26780_001	Banana	nucleus	33.72	37.66
Bra011533.1-P	Field mustard	nucleus	33.33	36.59
CDX75433	Canola	nucleus	33.43	36.58
CDX76281	Canola	nucleus	34.31	36.41
CDY46250	Canola	nucleus	33.63	36.33
GSMUA_Achr3P30500_001	Banana	nucleus	31.87	34.39
Os04t0110300-02	Rice	plasma membrane	26.0	30.02
TraesCS4D01G053300.2	Wheat	nucleus	26.2	29.1
EER93546	Sorghum	nucleus	25.71	28.93
TraesCS4A01G261600.1	Wheat	nucleus	26.2	28.91
Zm00001d033825_P001	Maize	nucleus	25.51	28.9
Zm00001d013391_P006	Maize	nucleus	25.71	28.81
HORVU4Hr1G008820.1	Barley	nucleus	26.39	28.33
EES10369	Sorghum	nucleus	24.93	28.24
VIT_18s0001g02160.t01	Wine grape	nucleus	12.22	28.22
TraesCS4B01G053000.2	Wheat	nucleus	26.2	28.21
Zm00001d004521_P001	Maize	nucleus, plastid	20.92	25.51
VIT_18s0122g00670.t01	Wine grape	nucleus, plastid	10.95	22.76
VIT_18s0001g02190.t01	Wine grape	nucleus	6.94	19.72
VIT_17s0000g00990.t01	Wine grape	cytosol	10.65	19.36
Os03t0722100-01	Rice	cytosol, nucleus	9.48	18.13

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:100855339	wikigene:100855339	MapMan:12.4.2.1	Gene3D:3.30.60.90
EMBL:AM457818	ProteinID:CAN61314	ProteinID:CAN61314.1	ProteinID:CCB56973	ProteinID:CCB56973.1	ncoils:Coil
UniProt:F6HQL6	EMBL:FN596006	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270
GO:GO:0046872	InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388
EntrezGene:LOC100855339	wikigene:LOC100855339	PFAM:PF00249	PFAM:PF00569	PFAM:PF04433	PFAM:PF16495
ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF39
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689
SUPFAM:SSF57850	InterPro:SWIRM	UniParc:UPI000210802C	ArrayExpress:VIT_03s0063g02410	EnsemblPlantsGene:VIT_03s0063g02410	EnsemblPlants:VIT_03s0063g02410.t01
unigene:Vvi.1125	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_003631607	RefSeq:XP_003631607.1	InterPro:Znf_ZZ	SEG:seg

Description

No Description!

Coordinates

chr3:+:5641144..5657126

Molecular Weight (calculated)

111084.0 Da

IEP (calculated)

4.641

GRAVY (calculated)

-0.745

Length

1023 amino acids

Sequence
(BLAST)

0001: MEEKRREAGS LPPASSSAGT VTAKVTETEP KSEPPSSRRR AGGQKRKSNN LSASNSTPSK RLAREKALAP PLASIHNGPC TRARQSPNNV SSAAAATAAA
0101: SGALQKLDQP EAAPGASSSG AGLTAEELNV KNEDWEALEA EMAAEFEAIR SRDANVHVVP SSSGEIHLFT TLSTGWFSWT KVHPLEAQAM PSFFNGKSEN
0201: RNPDMYKQIR DWIIKRFHGN PNTQIEVKDL SELEIGDLDA RQEVMEFLDY WGLINFHPFL PAESSVANGD DDTAKQLDSS VEKLYRFDMV QSCPPVVPKA
0301: NMSAPTMASG LFPESAFVEE LVRSEGPSVE YHCNSCSADC SRKRYHCQKQ ADFDLCTECF NNQKFGSDMS SSDFILMEPA EAPGVSGGKW TDQETLLLLE
0401: ALELYKENWN EIAEHVATKT KAQCILHFVQ MPIEDTFIDC EDETNVNPQE NADPVSANND SSVPKDIPES TESKTDVSEG HPPSSAMETS KPEGPPLSSP
0501: METSKPESQP PPSPMETSKP EGGNEMKDNQ ETGEACALKA LREAFEAVGS LPTPGAPLTF TDAGNPVMAL AVFLTQLVGS GRASAAVHSS LKSMSSNSPG
0601: MQLAARHCYI LEDPPDDKKE QVGSESATAE MVDQDAHKDE NMKDVNEKDE KQKDVNQKDA SQEDENQKHE NQKELNQKEE NQKDVNQREE HSISILEGSD
0701: TLKDQNENKI EDSVPEEKLS VPPNGECTEK SLAAKEPDVV VSNDSEPGIL SQSSNSDLPK DCPPNSVDKS DDLTPKAGLL PSSMKESGDG ASVKDHSQPS
0801: EAPKDVDTVP ESLPLQTKEP LQSLTSNTLV ENGANTGRDQ TKEGKSESHD SSKTKPDPSI DKIKRAATSA LSAAAVKAKL LANQEEDQIQ QFATLLIEKQ
0901: LHKLETKLAF FNEMESVITR VREQMDRSRQ RLYHERAQII AARLGFAGSS SRPTAPSLPI NRPGMSFPTS VPRPPMGMTS QRPPMSRPMM MAPSSLNTLV
1001: SSTVAGSSIR PPSQDKLSSV GTK

Best Arabidopsis Sequence Match ( AT4G34430.3 )
(BLAST)

001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSADAEG NDDNSHKDDQ PEEKSKKAEE VSLNSDDREM PDTDTGKETQ DSVSEEKQPG SRTENSTTKL DAVQEKRSSK PVTTDNSEKP VDIICPSQDK
701: CSGKELQEPL KDGNKLSSEN KDASQSTVSQ SAADASQPEA SRDVEMKDTL QSEKDPEDVV KTVGEKVQLA KEEGANDVLS TPDKSVSQQP IGSASAPENG
801: TAGGNPNIEG KKEKDICEGT KDKYNIEKLK RAAISAISAA AVKAKNLAKQ EEDQIRQLSG SLIEKQLHKL EAKLSIFNEA ESLTMRVREQ LERSRQRLYH
901: ERAQIIAARL GVPPSMSSKA SLPTNRIAAN FANVAQRPPM GMAFPRPPMP RPPGFPVPGS FVAATTMTGS SDPSPGSDNV SSV

Arabidopsis Description

CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.