Factsheet for Zm00001d004521_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10369	Sorghum	nucleus	41.0	38.1
Os04t0110300-02	Rice	plasma membrane	32.78	31.04
Zm00001d013391_P006	Maize	nucleus	30.39	27.93
Zm00001d033825_P001	Maize	nucleus	29.56	27.46
GSMUA_Achr7P26780_001	Banana	nucleus	28.37	25.98
GSMUA_Achr3P30500_001	Banana	nucleus	28.96	25.63
Solyc01g109510.2.1	Tomato	nucleus	27.53	24.44
PGSC0003DMT400001865	Potato	nucleus	26.7	23.7
CDY46250	Canola	nucleus	26.7	23.65
CDX76281	Canola	nucleus	26.94	23.44
Bra011533.1-P	Field mustard	nucleus	25.03	22.53
KRH24488	Soybean	nucleus	27.18	22.44
CDX75433	Canola	nucleus	24.91	22.35
VIT_03s0063g02410.t01	Wine grape	nucleus	25.51	20.92
KRH29482	Soybean	nucleus	26.1	20.92
AT4G34430.4	Thale cress	nucleus	24.55	20.89
Zm00001d053687_P001	Maize	plastid	12.4	20.76
Zm00001d041847_P002	Maize	nucleus	14.3	15.52
Zm00001d000110_P003	Maize	mitochondrion	14.06	15.05
Zm00001d003284_P001	Maize	nucleus	11.68	11.11

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	Gene3D:3.30.60.90	UniProt:A0A1D6EFW3	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0046872	InterPro:Homeobox-like_sf	InterPro:IPR000433
InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	ProteinID:ONM19071.1	PFAM:PF00249	PFAM:PF00569
PFAM:PF04433	ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802
PANTHER:PTHR12802:SF39	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717	SUPFAM:SSF46689
SUPFAM:SSF57850	InterPro:SWIRM	UniParc:UPI0008436A94	InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d004521	EnsemblPlants:Zm00001d004521_P001
EnsemblPlants:Zm00001d004521_T001	InterPro:Znf_ZZ	SEG:seg	:	:	:

Description

MYB-related-transcription factor 114SWI/SNF complex subunit SWI3D

Coordinates

chr2:-:116470474..116480753

Molecular Weight (calculated)

91357.7 Da

IEP (calculated)

4.738

GRAVY (calculated)

-0.693

Length

839 amino acids

Sequence
(BLAST)

001: MEPKPSPPPA APSRRRGAAT KRKEKAASAV PSGSPSPKRQ ARERGPVYQP SLPPPQPRSR QPARKPQRKP ARNKSPRRSV EPPRAQEEEE GPPPLPPPRP
101: SLEKEIEAVL SRGAGVHVVP TFAGWFSWKE IHPIEKQMLA TFFDGKSERR TPEIYLGIRN LIMNKFHCNP EVHLESKDLC ELSVGEMDAR LVILEFLAYW
201: GLVNFHPFPS VVQEHKLVES KSSAETAEGI SQAEKLFQFE TVHSYLVPVS KEAEAISPVQ FTSLLPEPTL AEDAIGAAES SVEYHCNSCS VDCSRKRYHC
301: RTQVDFDFCS DCYNEEKFDE GMSKSDFILM ESADVPGSGG SNWTDHETLL LLEALEIFKG KEWHEIAEHV ATKTKEQCML HFLQMPISEP FLDGDDFNET
401: PQKITKQDSA ETGPSDVPDK MDVDGNAEGK ESTDEKAYKK ADSSSAETRT KLADQNISAK EDTMKLGDDD LVASIVDEPN KSSLVDPAHK KNSANADVSG
501: EHPSNFITNI LRSTFEAAAF LASLVERDDA VSSCCSSLRA ISEMSPALQL ATEHCFILPD PPSDLKDPAS TFSPCAGGES QEGADTTQNV NDTDKNNSER
601: EDSDLALEKE SATFTSQKQH LEELSDAKET FIGGPEAEAK SNSTKDSDNP IAKVGSSVAS DKMRDGCNAN AIPCPATSNH TTEPSSVASQ EASPASTKDT
701: AIPEQVERPS SEELLADVSL PQGKVEPKKT EPAPAASSSI QQHGCKQAGN GNTVSEDGNK NVVSHRSWKP GVTIERFDRE DAEEAFVGAE HDNRFSNGCS
801: SGFQNNPARG SGDHQTPSRA CACLESAAEA PLKLFIVCI

Best Arabidopsis Sequence Match ( AT4G34430.1 )
(BLAST)

001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSCSADA EGNDDNSHKD DQPEEKSKKA EEVSLNSDDR EMPDTDTGKE TQDSVSEEKQ PGSRTENSTT KLDAVQEKRS SKPVTTDNSE KPVDIICPSQ
701: DKCSGKELQE PLKDGNKLSS ENKDASQSTV SQSAADASQP EASRDVEMKD TLQSEKDPED VVKTVGEKVQ LAKEEGANDV LSTPDKSVSQ QPIGSASAPE
801: NGTAGGNPNI EGKKEKDICE GTKDKYNIEK LKRAAISAIS AAAVKAKNLA KQEEDQIRQL SGSLIEKQLH KLEAKLSIFN EAESLTMRVR EQLERSRQRL
901: YHERAQIIAA RLGVPPSMSS KASLPTNRIA ANFANVAQRP PMGMAFPRPP MPRPPGFPVP GSFVAATTMT GSSDPSPGSD NVSSV

Arabidopsis Description

CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.