Factsheet for Bra011533.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75433	Canola	nucleus	97.32	97.01
AT4G34430.4	Thale cress	nucleus	51.29	48.48
PGSC0003DMT400001865	Potato	nucleus	34.87	34.39
KRH24488	Soybean	nucleus	37.12	34.06
VIT_03s0063g02410.t01	Wine grape	nucleus	36.59	33.33
Solyc01g109510.2.1	Tomato	nucleus	33.69	33.23
GSMUA_Achr7P26780_001	Banana	nucleus	32.4	32.97
KRH29482	Soybean	nucleus	36.27	32.28
GSMUA_Achr3P30500_001	Banana	nucleus	31.55	31.01
EER93546	Sorghum	nucleus	28.97	29.7
TraesCS4D01G053300.2	Wheat	nucleus	29.18	29.53
Zm00001d013391_P006	Maize	nucleus	28.86	29.46
Zm00001d033825_P001	Maize	nucleus	28.43	29.35
TraesCS4A01G261600.1	Wheat	nucleus	29.18	29.34
HORVU4Hr1G008820.1	Barley	nucleus	29.29	28.65
TraesCS4B01G053000.2	Wheat	nucleus	29.18	28.63
Os04t0110300-02	Rice	plasma membrane	27.04	28.44
EES10369	Sorghum	nucleus	26.39	27.24
Zm00001d004521_P001	Maize	nucleus, plastid	22.53	25.03
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	15.77	23.82
Bra021864.1-P	Field mustard	plastid	11.59	23.53
Bra004441.1-P	Field mustard	nucleus	11.7	21.21
Bra016409.1-P	Field mustard	nucleus	17.7	20.81
Os03t0722100-01	Rice	cytosol, nucleus	9.44	16.45

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	Gene3D:3.30.60.90	EnsemblPlantsGene:Bra011533	EnsemblPlants:Bra011533.1
EnsemblPlants:Bra011533.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0046872
InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	UniProt:M4D4X6
PFAM:PF00249	PFAM:PF00569	PFAM:PF04433	PFAM:PF16495	ScanProsite:PS01357	PFscan:PS50135
PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF39	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00291	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	SUPFAM:SSF57850	InterPro:SWIRM
UniParc:UPI0002545706	InterPro:WH-like_DNA-bd_sf	InterPro:Znf_ZZ	SEG:seg	:	:

Description

AT4G34430 (E=0.0) CHB3, ATSWI3D | CHB3; DNA binding / transcription factor/ zinc ion binding

Coordinates

chrA01:-:1798074..1801601

Molecular Weight (calculated)

101590.0 Da

IEP (calculated)

4.751

GRAVY (calculated)

-0.757

Length

932 amino acids

Sequence
(BLAST)

001: MEERRRDAGG TLASAGSSGD SPASEPTPRR RVKRKSNALG ASNSSSTSSK RMLTREKAML ASFSPVHNGP LTRARQAPSN MPSATEAKPE LLSAPDGEKP
101: KEEEERNKAI REWEALEAKI EADFEGIRSR GSNVHVVPNH CGWFSWGKIH PLEERSLPSF FNGKLEGRSS DVYIEIRDWI MRKFHSDPNT QIEGKHLTEL
201: EVGDVEAKQE VMEFLDYWGL INFHPFPPPD ASSSDGGERD DGVGDKESLL NSLYRFQADE ASSMAAFVQK PRLTAQATTT PSGLFPDPMA AADDSLKQEG
301: PAVEYHCNSC SADCSLKRYH CPKQADFDLC MECFDSGKFS SDMSSSDFIL LEPAKDPGVG SGKWTDQETL LLLEGIEIFK ENWSEIAEHV ATKTKAQCML
401: HFLQMPIEDA FLDQTDHKDP SIKDTTDIAV SKDEKPVLND APVEKEKETE NTNLVVEVEA VKEAPEKEDD NEGKVPQESS KPGDASEETK EVEADQKTPE
501: VEIVIDERCK DEADENVALK ALTEAFEDVG YPITPEASLS FADLGNPVMG LAAFLVRLAG SDVATASARA SVKSLNSNSG LLLATRHCFV LEDPPENKED
601: LTESKSVDAE EKSQKAEDDR EMTDSDPGKV NQDSVSEGKQ PGSLTESYAR NPDSEGQKVS INAAATKNSE KPADIICKLQ DKSSGKELEK PSKDGDKLSS
701: ENKAASKATV SKAAADVSQP EASKDVEMKD TLQSEKDPQD MVKTAGEKAE QAKEDDHSMP DTSVAEQPIG SASLPENGTG ENLNKEGSKE KNVCAGKKDK
801: HNSGKLKRAA ISALSAAAGK AKHLAKLEED QIRQLSGSLI EKQLHKLEAK LSIFNDAESL TARVREQLER SRQRLYHERA QIIAARLGVP PSVSSKASLP
901: ANRIATNFAN VAHRPPIGMA FPRPPMPRPP GP

Best Arabidopsis Sequence Match ( AT4G34430.3 )
(BLAST)

001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSADAEG NDDNSHKDDQ PEEKSKKAEE VSLNSDDREM PDTDTGKETQ DSVSEEKQPG SRTENSTTKL DAVQEKRSSK PVTTDNSEKP VDIICPSQDK
701: CSGKELQEPL KDGNKLSSEN KDASQSTVSQ SAADASQPEA SRDVEMKDTL QSEKDPEDVV KTVGEKVQLA KEEGANDVLS TPDKSVSQQP IGSASAPENG
801: TAGGNPNIEG KKEKDICEGT KDKYNIEKLK RAAISAISAA AVKAKNLAKQ EEDQIRQLSG SLIEKQLHKL EAKLSIFNEA ESLTMRVREQ LERSRQRLYH
901: ERAQIIAARL GVPPSMSSKA SLPTNRIAAN FANVAQRPPM GMAFPRPPMP RPPGFPVPGS FVAATTMTGS SDPSPGSDNV SSV

Arabidopsis Description

CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.