CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033825_P001	Maize	nucleus	89.55	90.14
Zm00001d013391_P006	Maize	nucleus	90.32	89.92
TraesCS4D01G053300.2	Wheat	nucleus	69.97	69.06
TraesCS4A01G261600.1	Wheat	nucleus	69.97	68.61
TraesCS4B01G053000.2	Wheat	nucleus	70.63	67.58
HORVU4Hr1G008820.1	Barley	nucleus	70.08	66.84
EES10369	Sorghum	nucleus	46.09	46.4
GSMUA_Achr3P30500_001	Banana	nucleus	35.2	33.76
GSMUA_Achr7P26780_001	Banana	nucleus	33.33	33.08
CDX76281	Canola	nucleus	31.79	29.98
CDY46250	Canola	nucleus	30.58	29.36
CDX75433	Canola	nucleus	30.03	29.2
Bra011533.1-P	Field mustard	nucleus	29.7	28.97
AT4G34430.4	Thale cress	nucleus	30.91	28.5
PGSC0003DMT400001865	Potato	nucleus	29.48	28.36
Solyc01g109510.2.1	Tomato	nucleus	29.48	28.36
KRH24488	Soybean	nucleus	30.14	26.97
KRH29482	Soybean	nucleus	30.25	26.27
VIT_03s0063g02410.t01	Wine grape	nucleus	28.93	25.71
Os03t0722100-01	Rice	cytosol, nucleus	14.74	25.05
EES04686	Sorghum	plastid	12.32	22.49
EES10999	Sorghum	nucleus	12.87	21.08
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	16.28	19.07
EES15751	Sorghum	nucleus	16.17	18.99

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	Gene3D:3.30.60.90	EntrezGene:8063359	UniProt:C5WMW5
EnsemblPlants:EER93546	ProteinID:EER93546	ProteinID:EER93546.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	InterPro:Homeobox-like_sf	InterPro:IPR000433
InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	PFAM:PF00249	PFAM:PF00569	PFAM:PF04433
PFAM:PF16495	ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802
PANTHER:PTHR12802:SF62	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717	InterPro:SMARCC_C
EnsemblPlantsGene:SORBI_3001G109800	SUPFAM:SSF46689	SUPFAM:SSF57850	InterPro:SWIRM	unigene:Sbi.6410	UniParc:UPI00081AB29F
InterPro:WH-like_DNA-bd_sf	InterPro:Znf_ZZ	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:8521184..8526724

Molecular Weight (calculated)

98866.1 Da

IEP (calculated)

4.756

GRAVY (calculated)

-0.676

Length

909 amino acids

Sequence
(BLAST)

001: MEPKPSSAAH GDAPAVEAPR RRGGGGKRKS AGSSFTPSKR QAKERNASFH VPPHLLHSGP LTRAARQSPH KLAGTPPESG PASSAAATGD GVSGGKAGVD
101: AIRPETAETP APELPLVDEM FEAVRSRGAG VHVVPTFAGW FSWKEIHPVE KQTLPSFFNG KSEKRTPEVY LAIRNSIVMK FHANPQCQLE SKDLAEFSIG
201: ETDARQEVLE FLDHWGLINF HPFPPAGHEE SKPEESQDNS NDEKASLIEQ LFKFESVQSY MMPLPKKEDV GAPPPLPSLF PEPVLIEDVV AAAEPSVEYH
301: CNSCSVDCSR KRYHCRTQAD FDLCCDCYNE GKFDPGMAKT DFILMDSAEV SGASGTSWTD EETLLLLEGL EIFGGKWAEI AEHVATKTKA QCMLHFLQMQ
401: IEDRFHDGED INQNIPVRTE QATTEKVIAE TSEKMEVEDK AEGRDTADEN ALEKTEGNCV ETKTEDASVV VNKDTQNSGG KDSGVSPSTE EPKQSSDEQP
501: IVKENSVDVD TSGEKLSNVA IDILKSAFEA AGHSPEYEGS FADAGNPVMA LAAYLTGLMD DDNTTTSFRG SLKAISEVSP ALQLASRHCF ILEDPPNELK
601: DICASVSKKN TDGDQPKDED MIQNSIDTEK KVINEKEDKS LSVEKKNNSS TSQNDHQETD IKSVSHDDCS LVEPKTNNAK ESGDSTAIGD TSATDTTKDV
701: DAGNTKQVND LPSVEVGAPD DSSLKGKDKL NKTEDAVATP ATVQEQKQKQ KHSQALENGD KKGPNNIESV IVDEEKGSIV TANQNDSITR LKRAAATAVS
801: AAAVKAKFLG DQEEYQIRRL TALMIEKLFQ KIEVKMSLFS EIEQVVLRTR EYTEKTRKKL LMERNAIIAA RMGALPSRPN QPGVAGNRLP PGYSNPPVRP
901: PNAMPRPTS

Best Arabidopsis Sequence Match ( AT4G34430.2 )
(BLAST)

001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSCSADA EGNDDNSHKD DQPEEKSKKA EEVSLNSDDR EMPDTDTGKE TQDSVSEEKQ PGSRTENSTT KLDAVQEKRS SKPVTTDNSE KPVDIICPSQ
701: DKCSGKELQE PLKDGNKLSS ENKDASQSTV SQSAADASQP EASRDVEMKD TLQSEKDPED VVKTVGEKVQ LAKEEGANDV LSTPDKSVSQ QPIGSASAPE
801: NGTAGGNPNI EGKKEKDICE GTKDKYNIEK LKRAAISAIS AAAVKAKNLA KQEEDQIRQL SGSLIEKQLH KLEAKLSIFN EAESLTMRVR EQLERSRQRL
901: YHERAQIIAA RLGVPPSMSS KASLPTNRIA ANFANVAQRP PMGMAFPRPP MPRPPGFPVP GSFVAATTMT GSSDPSPGSD NVSSV

Arabidopsis Description

CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.