CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0110300-02	Rice	plasma membrane	50.94	51.92
EER93546	Sorghum	nucleus	46.4	46.09
Zm00001d004521_P001	Maize	nucleus, plastid	38.1	41.0
GSMUA_Achr3P30500_001	Banana	nucleus	35.33	33.65
GSMUA_Achr7P26780_001	Banana	nucleus	33.44	32.97
PGSC0003DMT400001865	Potato	nucleus	28.57	27.3
Solyc01g109510.2.1	Tomato	nucleus	28.35	27.09
CDY46250	Canola	nucleus	28.35	27.03
CDX76281	Canola	nucleus	28.79	26.97
KRH24488	Soybean	nucleus	30.34	26.97
CDX75433	Canola	nucleus	27.57	26.63
Bra011533.1-P	Field mustard	nucleus	27.24	26.39
AT4G34430.4	Thale cress	nucleus	28.79	26.37
KRH29482	Soybean	nucleus	30.23	26.07
VIT_03s0063g02410.t01	Wine grape	nucleus	28.24	24.93
EES04686	Sorghum	plastid	11.63	21.08
EES10999	Sorghum	nucleus	12.62	20.54
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	15.84	18.43
EES15751	Sorghum	nucleus	15.28	17.83

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	Gene3D:3.30.60.90	UniProt:C5YBP1	EnsemblPlants:EES10369
ProteinID:EES10369	ProteinID:EES10369.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270
GO:GO:0046872	InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388
PFAM:PF00249	PFAM:PF00569	PFAM:PF04433	PFAM:PF16495	ScanProsite:PS01357	PFscan:PS50135
PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF39	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00291	SMART:SM00717	InterPro:SMARCC_C	EnsemblPlantsGene:SORBI_3006G008300	SUPFAM:SSF46689	SUPFAM:SSF57850
InterPro:SWIRM	UniParc:UPI00081AC359	InterPro:WH-like_DNA-bd_sf	InterPro:Znf_ZZ	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:1242686..1250884

Molecular Weight (calculated)

98513.2 Da

IEP (calculated)

4.720

GRAVY (calculated)

-0.622

Length

903 amino acids

Sequence
(BLAST)

001: MEPKPSPPPP PPAAPSRRRG AATKRKERAA SAAPSVSPSP KRQARDCGPV DPPSLPPPQP RSRQPARKPR RTPARKKSTQ RSVKPPPMQE EEEGPPPPPP
101: PPPPPPPPPP VPPPRPSREK EIEAVLSRGA GVHVVPTFAG WFSWKEIHPI EKQMLATFFD GKSERRTPEI YLGIRNLIMN KFHFNPEVHL ESKDLCELSI
201: GEMDARLAIL EFLAHWGLVN FHPFPPVTQE RKLVESKSSA EIEDEISLVE KLFQFETVHS YLVPVSKKVE AISPVQFTSL LSEPTLAENA IGAAESSVEY
301: HCNSCSVDCS RKRYHCRTQV DFDFCSECYN EGKFDEGMSK ADFILMESAE VPGSGGSNWT DQEILLLLEA LEIFKGKQWG EIAEHVATKT KEQCMLYFLQ
401: MPISEPFLDG EDFNETPQKI TEQDLEIGPS DVPDEMDVDG NAEGKESTDE KAYKKANSIS SETRTKLADQ NVSEKEDTMD AGGDDLVASI DDESNKSSLM
501: DPAHEKISAN ADVSGEHTSN FVIDVLRSTF EAVDHFLGQE DLGSFAEAGN PVMALAAFFA SLAEHDDAVS SCCSSLRAIS EISPALQLAT EHCFILPDPP
601: SDLKDPTSTF SACTGSECQE NDLGLKKENA TFISQKEHPE LSDTKERGPD AEAKSNSSKD SDNPIATVDC SVASDKMRDG CNANAISCSA TSNNATEPSS
701: IASQEASAAS TKDTTNPEQV EGDKPGSEEL PAVVSPSQEK TEPKKIERAP AASSSIQQSE CKQTGNGNSE EPKSNENIAS DDDPIIRLQR AAGTAISAAA
801: VKAKFLAEQE EGYIRQLAAL VIEKQFQKIQ TKMSFLTEVE NLVLRSREST ERMRKKLMLE RNMIIASRMG AAAAAAASRT NQQGAPGTRL PVGYALNPQL
901: RRP

Best Arabidopsis Sequence Match ( AT4G34430.2 )
(BLAST)

001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSCSADA EGNDDNSHKD DQPEEKSKKA EEVSLNSDDR EMPDTDTGKE TQDSVSEEKQ PGSRTENSTT KLDAVQEKRS SKPVTTDNSE KPVDIICPSQ
701: DKCSGKELQE PLKDGNKLSS ENKDASQSTV SQSAADASQP EASRDVEMKD TLQSEKDPED VVKTVGEKVQ LAKEEGANDV LSTPDKSVSQ QPIGSASAPE
801: NGTAGGNPNI EGKKEKDICE GTKDKYNIEK LKRAAISAIS AAAVKAKNLA KQEEDQIRQL SGSLIEKQLH KLEAKLSIFN EAESLTMRVR EQLERSRQRL
901: YHERAQIIAA RLGVPPSMSS KASLPTNRIA ANFANVAQRP PMGMAFPRPP MPRPPGFPVP GSFVAATTMT GSSDPSPGSD NVSSV

Arabidopsis Description

CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.