Factsheet for GSMUA_Achr7P26780_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P30500_001	Banana	nucleus	51.31	49.58
TraesCS4D01G053300.2	Wheat	nucleus	34.5	34.31
TraesCS4A01G261600.1	Wheat	nucleus	34.72	34.3
Os04t0110300-02	Rice	plasma membrane	33.08	34.2
HORVU4Hr1G008820.1	Barley	nucleus	35.48	34.1
VIT_03s0063g02410.t01	Wine grape	nucleus	37.66	33.72
Zm00001d013391_P006	Maize	nucleus	33.52	33.63
TraesCS4B01G053000.2	Wheat	nucleus	34.83	33.58
Solyc01g109510.2.1	Tomato	nucleus	34.61	33.55
EES10369	Sorghum	nucleus	32.97	33.44
Zm00001d033825_P001	Maize	nucleus	32.86	33.33
EER93546	Sorghum	nucleus	33.08	33.33
KRH24488	Soybean	nucleus	36.9	33.27
PGSC0003DMT400001865	Potato	nucleus	34.17	33.12
CDY46250	Canola	nucleus	33.73	32.63
Bra011533.1-P	Field mustard	nucleus	32.97	32.4
CDX75433	Canola	nucleus	32.97	32.3
AT4G34430.4	Thale cress	nucleus	34.61	32.15
KRH29482	Soybean	nucleus	36.46	31.9
CDX76281	Canola	nucleus	33.41	31.74
Zm00001d004521_P001	Maize	nucleus, plastid	25.98	28.37
GSMUA_AchrUn_...	Banana	plastid	12.88	23.89
GSMUA_Achr6P25400_001	Banana	nucleus	19.0	22.19
GSMUA_Achr8P30120_001	Banana	nucleus	18.78	22.02
Os03t0722100-01	Rice	cytosol, nucleus	11.57	19.81
GSMUA_Achr9P16230_001	Banana	nucleus	12.01	19.06

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	Gene3D:3.30.60.90	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008270	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr7G26780_001	EnsemblPlants:GSMUA_Achr7P26780_001	EnsemblPlants:GSMUA_Achr7T26780_001
InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	UniProt:M0TL14
PFAM:PF00249	PFAM:PF00569	PFAM:PF04433	PFAM:PF16495	ScanProsite:PS01357	PFscan:PS50135
PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF39	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00291	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	SUPFAM:SSF57850	InterPro:SWIRM
UniParc:UPI00029660EF	InterPro:WH-like_DNA-bd_sf	InterPro:Znf_ZZ	SEG:seg	:	:

Description

Putative SWI/SNF complex subunit SWI3D [Source:GMGC_GENE;Acc:GSMUA_Achr7G26780_001]

Coordinates

chr7:+:27999195..28005286

Molecular Weight (calculated)

99861.1 Da

IEP (calculated)

4.652

GRAVY (calculated)

-0.584

Length

916 amino acids

Sequence
(BLAST)

001: MAETLAEAPR RRASGSKRKA SASSSSTPVK RQAKERNLLH HLFPVHNGPC TRARQSPHKH AAASHRSVEH AAASAWASEA RGTDASASGG PIKAEEEEEV
101: EEPLVDVEFE AVRSRGVDVH AVPTAAGWFS WKVIHPVEKH MLPSFFSGKS ENRTPEVYME IRNSIIKKFH SDPQTQVELK DFSELSVGDM DARQEILEFL
201: DHWGLINFHP FPPSENEASK SDADDRDKTS TLVDKMYQFE TIQSFPRLAT KKEESLVPAV PPCLLPESAL LDDLIRPVGP SVEYHCNSCS ADCSRKRFHC
301: QKQADFDLCA DCYNDGKFGS GMSPADFILM ESAEGPGLSV GSWTDQETLL LLEALELFGE NWNEIAEHVA TKTKAQCILH FLQMPIEDSF LEGGDDDDDV
401: NESNPGSKDQ ILSTKESTAT NTSESVEDDK KEAKEETSHT NAPDAEAKKS ESSDIVDEPI TSKTDRLVNK NTADVNICHE TGASFAIDAL KAAFQAVGYF
501: PEQGGLGSFA EAGNPVMALA VFLSGLVESD AVITSCRSSL KAMSEDSPSI QLATRHCFLL EDPPIDRKDP HLSVSAVAET SNEEANKDGN KTQTLDATDE
601: SKEKNEISAS ADNDGNSSNL LPDFSSKQID EKEVNDVIPS KAVPTTVQES VDQSLSGDQC MTSNVKDVTD ASSPVDPMQS TMKETENLAS QGEDSKSQEK
701: EIIGSKSVGE KPNTMTNSED LISADKVQQH TDIAKINTKV VLEEQECVQL GASANETKGK ADEGERTESH SDDEKNSDPT GVADDHNIDR LKRAAVTALS
801: AAAVKAKLLA KLEENEILKL VSLVIEKQLH KLEAKLAFFA DIDSVVLRMR EQTEKARQRL MLERSQIIAA RLGVPTSSLR ANPASLPANR LAMGYGATGI
901: KPPNMAWQKP PPVRRP

Best Arabidopsis Sequence Match ( AT4G34430.3 )
(BLAST)

001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSADAEG NDDNSHKDDQ PEEKSKKAEE VSLNSDDREM PDTDTGKETQ DSVSEEKQPG SRTENSTTKL DAVQEKRSSK PVTTDNSEKP VDIICPSQDK
701: CSGKELQEPL KDGNKLSSEN KDASQSTVSQ SAADASQPEA SRDVEMKDTL QSEKDPEDVV KTVGEKVQLA KEEGANDVLS TPDKSVSQQP IGSASAPENG
801: TAGGNPNIEG KKEKDICEGT KDKYNIEKLK RAAISAISAA AVKAKNLAKQ EEDQIRQLSG SLIEKQLHKL EAKLSIFNEA ESLTMRVREQ LERSRQRLYH
901: ERAQIIAARL GVPPSMSSKA SLPTNRIAAN FANVAQRPPM GMAFPRPPMP RPPGFPVPGS FVAATTMTGS SDPSPGSDNV SSV

Arabidopsis Description

CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.