Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES10999 | Sorghum | nucleus | 42.29 | 43.96 |
| Os04t0480300-01 | Rice | cytosol | 42.46 | 43.75 |
| CDX83324 | Canola | nucleus | 35.7 | 41.87 |
| TraesCS2D01G337400.1 | Wheat | nucleus | 40.21 | 41.73 |
| AT2G47620.1 | Thale cress | nucleus | 36.92 | 41.6 |
| HORVU2Hr1G082880.12 | Barley | nucleus | 27.38 | 41.58 |
| VIT_17s0000g00990.t01 | Wine grape | cytosol | 40.38 | 41.39 |
| CDX95728 | Canola | nucleus | 35.53 | 41.16 |
| TraesCS2B01G356600.1 | Wheat | nucleus | 39.51 | 40.93 |
| CDX80122 | Canola | nucleus | 36.05 | 40.62 |
| Bra004441.1-P | Field mustard | nucleus | 36.05 | 40.47 |
| CDY66036 | Canola | nucleus | 36.22 | 40.27 |
| KRH64580 | Soybean | nucleus | 36.22 | 39.66 |
| KRH53340 | Soybean | nucleus | 35.7 | 39.39 |
| Solyc03g097450.2.1 | Tomato | nucleus | 34.32 | 34.55 |
| GSMUA_AchrUn_... | Banana | plastid | 24.78 | 28.95 |
| Zm00001d003284_P001 | Maize | nucleus | 39.69 | 25.96 |
| GSMUA_Achr6P25400_001 | Banana | nucleus | 20.8 | 15.31 |
| GSMUA_Achr8P30120_001 | Banana | nucleus | 20.28 | 14.98 |
| GSMUA_Achr3P30500_001 | Banana | nucleus | 20.62 | 12.55 |
| GSMUA_Achr7P26780_001 | Banana | nucleus | 19.06 | 12.01 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.60 | MapMan:12.4.2.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr9G16230_001 | EnsemblPlants:GSMUA_Achr9P16230_001 | EnsemblPlants:GSMUA_Achr9T16230_001 | InterPro:Homeobox-like_sf | InterPro:IPR007526 |
| InterPro:IPR017884 | InterPro:IPR036388 | UniProt:M0U0T0 | PFAM:PF00249 | PFAM:PF04433 | PFAM:PF16495 |
| PFscan:PS50934 | PFscan:PS51293 | PANTHER:PTHR12802 | PANTHER:PTHR12802:SF41 | InterPro:SANT/Myb | InterPro:SANT_dom |
| SMART:SM00717 | InterPro:SMARCC_C | SUPFAM:SSF46689 | InterPro:SWIRM | UniParc:UPI0002951F8A | InterPro:WH-like_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
Putative SWI/SNF complex subunit SWI3A [Source:GMGC_GENE;Acc:GSMUA_Achr9G16230_001]
Coordinates
chr9:-:10931912..10936797
Molecular Weight (calculated)
63791.0 Da
IEP (calculated)
5.417
GRAVY (calculated)
-0.272
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPSSEGSDL ADRELYSIPS SASWFRWDDI DDTERRCLPE FFDGSSTSRN PRVYKEYRDF IISKYREDPT KCITFTEIRK SMIGDVGYLH KVFLFLEKWG
101: LINFGVKVPK ISVEDAGPKV VVEEGPPADV QVVPACIPQR KLVGMASSVG GENGFKLPPL TSYSDVFGDW LPKRGLVCGI CGDQSAAGGY ESLQDGVMVC
201: SKCSKNNSQA DGRTTEDSNH QVDDDAKAEG SANNVISAWT DAETLLLLEA VLKHGDDWAL IAQHVRTKSK LDCIARLIQL PFGEHILGSI NGTCANSNLI
301: TQATDVKKQS LINEPPQELI KTDLHIQTDE KDLVEEPMAE RPLKRRCLPS FVHVADSLIK QVAGFSTVAG AQIATAAADA AIVALCSENI SARKHFSINK
401: YGENDLLYTN NDHNSHFSGL KIEDQDMELH KQTVVSEKSL SATAFQVRAA IATALGAVAA RAKLLADQEE REIELLMASI IEVQLRKIQC KIKHFEELES
501: MMEHEYTLLQ KVKESTLEEW VTVLQQAFQA GIPRWSDDEL PKPFTTIKMH SVLLIEKLQT KVGHATGVAS TKKKSLV
101: LINFGVKVPK ISVEDAGPKV VVEEGPPADV QVVPACIPQR KLVGMASSVG GENGFKLPPL TSYSDVFGDW LPKRGLVCGI CGDQSAAGGY ESLQDGVMVC
201: SKCSKNNSQA DGRTTEDSNH QVDDDAKAEG SANNVISAWT DAETLLLLEA VLKHGDDWAL IAQHVRTKSK LDCIARLIQL PFGEHILGSI NGTCANSNLI
301: TQATDVKKQS LINEPPQELI KTDLHIQTDE KDLVEEPMAE RPLKRRCLPS FVHVADSLIK QVAGFSTVAG AQIATAAADA AIVALCSENI SARKHFSINK
401: YGENDLLYTN NDHNSHFSGL KIEDQDMELH KQTVVSEKSL SATAFQVRAA IATALGAVAA RAKLLADQEE REIELLMASI IEVQLRKIQC KIKHFEELES
501: MMEHEYTLLQ KVKESTLEEW VTVLQQAFQA GIPRWSDDEL PKPFTTIKMH SVLLIEKLQT KVGHATGVAS TKKKSLV
001: MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK
Arabidopsis Description
SWI3ASWI/SNF complex subunit SWI3A [Source:UniProtKB/Swiss-Prot;Acc:Q8W475]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.