Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 51.02 | 91.24 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 50.61 | 90.51 |
| Os02t0549600-01 | Rice | cytosol | 64.9 | 86.89 |
| Os04t0430100-01 | Rice | nucleus | 64.9 | 86.89 |
| Os01t0962600-01 | Rice | plastid | 62.45 | 85.47 |
| EES10818 | Sorghum | cytosol | 64.08 | 85.33 |
| VIT_16s0050g01160.t01 | Wine grape | cytosol | 62.45 | 85.0 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 61.63 | 84.36 |
| Zm00001d011816_P001 | Maize | plastid | 61.63 | 84.36 |
| Zm00001d003672_P001 | Maize | plastid | 62.04 | 83.98 |
| EES04270 | Sorghum | cytosol | 60.82 | 83.24 |
| KRH27894 | Soybean | cytosol | 60.41 | 82.22 |
| Solyc01g099670.2.1 | Tomato | nucleus | 60.82 | 81.87 |
| KRH77585 | Soybean | nucleus | 60.41 | 81.77 |
| Solyc12g096540.1.1 | Tomato | nucleus | 60.0 | 81.67 |
| PGSC0003DMT400075267 | Potato | cytosol | 60.0 | 81.67 |
| PGSC0003DMT400063697 | Potato | cytosol | 60.41 | 81.32 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 62.04 | 80.85 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 62.04 | 80.85 |
| KRH41234 | Soybean | nucleus | 59.59 | 80.66 |
| Zm00001d042023_P001 | Maize | plastid | 58.78 | 80.45 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 61.63 | 80.32 |
| KRH59964 | Soybean | nucleus | 59.59 | 79.78 |
| AT4G25740.1 | Thale cress | cytosol | 56.33 | 77.97 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 76.33 | 77.59 |
| AT5G52650.1 | Thale cress | cytosol | 55.51 | 75.98 |
| Bra019143.1-P | Field mustard | cytosol | 55.92 | 75.69 |
| Bra010448.1-P | Field mustard | cytosol | 55.92 | 75.69 |
| Bra013915.1-P | Field mustard | cytosol | 55.51 | 75.56 |
| Bra029112.1-P | Field mustard | cytosol | 54.29 | 75.14 |
| Bra003118.1-P | Field mustard | cytosol | 54.69 | 74.86 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 62.86 | 74.04 |
| GSMUA_AchrUn_... | Banana | extracellular | 70.2 | 73.82 |
| VIT_02s0025g00310.t01 | Wine grape | cytosol | 56.33 | 72.63 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 63.67 | 71.89 |
| CDY27840 | Canola | cytosol | 56.33 | 70.05 |
| Bra025492.1-P | Field mustard | cytosol | 51.02 | 69.83 |
| AT5G41520.1 | Thale cress | cytosol | 50.61 | 68.89 |
| Zm00001d048305_P001 | Maize | cytosol | 41.22 | 68.71 |
| CDY49476 | Canola | cytosol | 56.33 | 66.67 |
| CDX89397 | Canola | extracellular | 57.55 | 66.2 |
| CDY39734 | Canola | cytosol | 51.02 | 64.1 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 71.02 | 63.04 |
| CDY56154 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 55.51 | 62.39 |
| CDX92731 | Canola | cytosol | 57.55 | 61.84 |
| CDY35037 | Canola | cytosol | 51.02 | 61.27 |
| CDY44470 | Canola | cytosol | 51.43 | 60.0 |
| CDX94419 | Canola | mitochondrion | 58.37 | 59.58 |
| CDY51832 | Canola | plastid | 55.51 | 57.63 |
| CDY50187 | Canola | endoplasmic reticulum, golgi | 57.96 | 56.8 |
| CDY66010 | Canola | cytosol | 57.14 | 54.47 |
| GSMUA_Achr8P32790_001 | Banana | mitochondrion | 30.61 | 35.55 |
| CDX67498 | Canola | extracellular | 52.24 | 27.41 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P22420_001 | EnsemblPlants:GSMUA_Achr3T22420_001 | EnsemblPlantsGene:GSMUA_Achr3G22420_001 | Gene3D:1.10.10.10 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR036388 | InterPro:Rps10 | InterPro:S10_plectin_N | InterPro:WH-like_DNA-bd_sf | PANTHER:PTHR12146 |
| PANTHER:PTHR12146:SF7 | PFAM:PF03501 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000295E81B | UniProt:M0SGV8 |
| MapMan:17.1.3.1.11 | : | : | : | : | : |
Description
40S ribosomal protein S10 [Source:GMGC_GENE;Acc:GSMUA_Achr3G22420_001]
Coordinates
chr3:-:23380849..23384074
Molecular Weight (calculated)
27476.2 Da
IEP (calculated)
10.298
GRAVY (calculated)
-0.485
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVKYLILFI LISSILPIKD IYRVKDRNLL FLWFCLFGLC GSSALGSSSS RLRRLPFLPQ EAMIIPKKNR HEICKYLFQE GVLYAKKDYN LAKHPDIDVP
101: NLQVIKLMQS FKSREYVRET FAWQHYYWYL TNDGIEYLRT FLNLPSEIVP ATLKKSARPP PTRPFGSGPP GDRPRGPPRF EGDRPRFGDR DGYRGGPRAG
201: PPGDFGDKGG APPEFQPSFR GTGGRPGFGR GGGGYGSGAP SASLE
101: NLQVIKLMQS FKSREYVRET FAWQHYYWYL TNDGIEYLRT FLNLPSEIVP ATLKKSARPP PTRPFGSGPP GDRPRGPPRF EGDRPRFGDR DGYRGGPRAG
201: PPGDFGDKGG APPEFQPSFR GTGGRPGFGR GGGGYGSGAP SASLE
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.