Factsheet for VIT_16s0050g01160.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096540.1.1	Tomato	nucleus	91.11	91.11
PGSC0003DMT400075267	Potato	cytosol	91.11	91.11
Solyc01g099670.2.1	Tomato	nucleus	91.67	90.66
PGSC0003DMT400063697	Potato	cytosol	91.11	90.11
GSMUA_Achr11P...	Banana	cytosol	64.44	84.67
Zm00001d025413_P001	Maize	extracellular, mitochondrion	83.33	83.8
Os04t0430100-01	Rice	nucleus	85.0	83.61
Os02t0549600-01	Rice	cytosol	85.0	83.61
EES10818	Sorghum	cytosol	84.44	82.61
Os01t0962600-01	Rice	plastid	81.67	82.12
Zm00001d011816_P001	Maize	plastid	81.67	82.12
GSMUA_Achr2P08200_001	Banana	cytosol	62.22	81.75
Zm00001d003672_P001	Maize	plastid	81.67	81.22
Zm00001d042023_P001	Maize	plastid	79.44	79.89
EES04270	Sorghum	cytosol	79.44	79.89
VIT_02s0025g00310.t01	Wine grape	cytosol	82.78	78.42
TraesCS2A01G302600.1	Wheat	cytosol	80.56	77.13
TraesCS2D01G301300.1	Wheat	cytosol	80.56	77.13
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	80.56	77.13
HORVU3Hr1G111760.2	Barley	mitochondrion	80.0	69.23
HORVU0Hr1G004700.1	Barley	mitochondrion	81.67	67.74
Zm00001d048305_P001	Maize	cytosol	54.44	66.67
GSMUA_AchrUn_...	Banana	extracellular	83.89	64.81
GSMUA_Achr8P08040_001	Banana	unclear	85.0	63.49
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	85.0	62.45
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	85.56	55.8

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100243340	wikigene:100243340	EntrezGene:100257720	wikigene:100257720	MapMan:17.1.3.1.11
ProteinID:CCB47833	ProteinID:CCB47833.1	UniProt:F6H6C2	EMBL:FN595243	GO:GO:0000028	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0022627	InterPro:IPR036388	EntrezGene:LOC100243340	wikigene:LOC100243340
EntrezGene:LOC100257720	wikigene:LOC100257720	PFAM:PF03501	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	InterPro:Rps10
InterPro:S10_plectin_N	TIGR:TC67447	UniParc:UPI000210A996	ArrayExpress:VIT_16s0050g01160	EnsemblPlantsGene:VIT_16s0050g01160	EnsemblPlants:VIT_16s0050g01160.t01
unigene:Vvi.7090	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002273286	RefSeq:XP_002273286.2	RefSeq:XP_002278759	RefSeq:XP_002278759.1
RefSeq:XP_010662679.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:-:18058900..18061891

Molecular Weight (calculated)

19961.7 Da

IEP (calculated)

10.153

GRAVY (calculated)

-0.816

Length

180 amino acids

Sequence
(BLAST)

001: MIIPEKNRRE ISKYLFQEGV CYAKKDYNLA KHPEIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWYLTN DGIEFLRTYL NLPSEIVPAT LKKSVKPPGR
101: PMGGPPGDRP RGPPRFDGDR PRFGDRDGYR GGPRGPPGEF GGDKGGAPAD FQPSFRGSGG RPGFGRGGGG FGAAPSSSNF

Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)

001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP

Arabidopsis Description

RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.