Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 3
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0050g01160.t01 | Wine grape | cytosol | 78.42 | 82.78 |
| KRH27894 | Soybean | cytosol | 71.58 | 75.56 |
| KRH77585 | Soybean | nucleus | 71.58 | 75.14 |
| KRH41234 | Soybean | nucleus | 71.05 | 74.59 |
| KRH59964 | Soybean | nucleus | 71.05 | 73.77 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 68.42 | 72.63 |
| Os01t0962600-01 | Rice | plastid | 68.42 | 72.63 |
| Os02t0549600-01 | Rice | cytosol | 69.47 | 72.13 |
| Os04t0430100-01 | Rice | nucleus | 69.47 | 72.13 |
| Zm00001d011816_P001 | Maize | plastid | 67.89 | 72.07 |
| EES10818 | Sorghum | cytosol | 68.95 | 71.2 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 51.05 | 70.8 |
| Zm00001d003672_P001 | Maize | plastid | 67.37 | 70.72 |
| GSMUA_Achr11P... | Banana | cytosol | 50.53 | 70.07 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 68.95 | 69.68 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 68.95 | 69.68 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 68.95 | 69.68 |
| EES04270 | Sorghum | cytosol | 65.26 | 69.27 |
| Zm00001d042023_P001 | Maize | plastid | 65.26 | 69.27 |
| Bra025492.1-P | Field mustard | cytosol | 64.74 | 68.72 |
| AT5G41520.1 | Thale cress | cytosol | 64.21 | 67.78 |
| CDY39734 | Canola | cytosol | 66.32 | 64.62 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 70.0 | 63.94 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 71.58 | 62.67 |
| Zm00001d048305_P001 | Maize | cytosol | 48.42 | 62.59 |
| CDY44470 | Canola | cytosol | 66.84 | 60.48 |
| CDY35037 | Canola | cytosol | 64.74 | 60.29 |
| GSMUA_AchrUn_... | Banana | extracellular | 71.05 | 57.94 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 72.11 | 56.85 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 72.63 | 56.33 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 71.05 | 48.91 |
| CDX67498 | Canola | extracellular | 66.32 | 26.98 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.1.3.1.11 | ProteinID:CCB58197 | ProteinID:CCB58197.1 | UniProt:F6HUN1 | EMBL:FN596251 |
| GO:GO:0000028 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010252 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0022626 | GO:GO:0022627 | GO:GO:0030312 | GO:GO:0042788 | GO:GO:0090506 |
| GO:GO:2000032 | InterPro:IPR036388 | PFAM:PF03501 | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | InterPro:Rps10 |
| InterPro:S10_plectin_N | TMHMM:TMhelix | UniParc:UPI00021085DA | ArrayExpress:VIT_02s0025g00310 | EnsemblPlantsGene:VIT_02s0025g00310 | EnsemblPlants:VIT_02s0025g00310.t01 |
| InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:428171..429444
Molecular Weight (calculated)
21940.6 Da
IEP (calculated)
10.278
GRAVY (calculated)
-0.650
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGLVTEKTK EKGKKANWIF FSLFLWALLI RIIPEKNRRE ISKYLFQEGV CYAKKDYNLA KHPDIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWYLTN
101: DGIEFLRTYL NLPSEIVPAT LKKSVKPAGR PMGPPGDRPR GPPRFEGDRP RFGDRDGYRG GPRGPPGEFG DKGGAPADYQ PSFRVIRINL
101: DGIEFLRTYL NLPSEIVPAT LKKSVKPAGR PMGPPGDRPR GPPRFEGDRP RFGDRDGYRG GPRGPPGEFG DKGGAPADYQ PSFRVIRINL
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.