Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010220.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G41520.1 | Bra010220.1-P | AT2G25000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39734 | Canola | cytosol | 97.77 | 89.74 |
| AT5G41520.1 | Thale cress | cytosol | 88.27 | 87.78 |
| CDY44470 | Canola | cytosol | 97.21 | 82.86 |
| CDY35037 | Canola | cytosol | 94.41 | 82.84 |
| Bra029112.1-P | Field mustard | cytosol | 75.98 | 76.84 |
| Bra010448.1-P | Field mustard | cytosol | 77.65 | 76.8 |
| Bra019143.1-P | Field mustard | cytosol | 77.65 | 76.8 |
| KRH27894 | Soybean | cytosol | 76.54 | 76.11 |
| KRH77585 | Soybean | nucleus | 76.54 | 75.69 |
| KRH41234 | Soybean | nucleus | 76.54 | 75.69 |
| PGSC0003DMT400075267 | Potato | cytosol | 75.98 | 75.56 |
| Bra013915.1-P | Field mustard | cytosol | 75.42 | 75.0 |
| KRH59964 | Soybean | nucleus | 76.54 | 74.86 |
| Solyc12g096540.1.1 | Tomato | nucleus | 74.86 | 74.44 |
| Solyc01g099670.2.1 | Tomato | nucleus | 75.42 | 74.18 |
| Bra003118.1-P | Field mustard | cytosol | 73.74 | 73.74 |
| PGSC0003DMT400063697 | Potato | cytosol | 74.86 | 73.63 |
| Zm00001d011816_P001 | Maize | plastid | 68.72 | 68.72 |
| Os01t0962600-01 | Rice | plastid | 68.72 | 68.72 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 52.51 | 68.61 |
| GSMUA_Achr11P... | Banana | cytosol | 52.51 | 68.61 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 68.16 | 68.16 |
| Os02t0549600-01 | Rice | cytosol | 68.16 | 66.67 |
| Os04t0430100-01 | Rice | nucleus | 68.16 | 66.67 |
| Zm00001d003672_P001 | Maize | plastid | 67.04 | 66.3 |
| EES04270 | Sorghum | cytosol | 65.92 | 65.92 |
| Zm00001d042023_P001 | Maize | plastid | 65.36 | 65.36 |
| EES10818 | Sorghum | cytosol | 67.04 | 65.22 |
| VIT_02s0025g00310.t01 | Wine grape | cytosol | 68.72 | 64.74 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 65.92 | 62.77 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 65.92 | 62.77 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 65.92 | 62.77 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 67.04 | 57.69 |
| Zm00001d048305_P001 | Maize | cytosol | 44.69 | 54.42 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 65.92 | 54.38 |
| GSMUA_AchrUn_... | Banana | extracellular | 70.39 | 54.08 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 69.83 | 51.87 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 69.83 | 51.02 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 70.95 | 46.01 |
| CDX67498 | Canola | extracellular | 93.85 | 35.97 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.1.3.1.11 | EnsemblPlantsGene:Bra025492 | EnsemblPlants:Bra025492.1 | EnsemblPlants:Bra025492.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009653 |
| GO:GO:0010252 | GO:GO:0022626 | GO:GO:0022627 | GO:GO:0030312 | GO:GO:0042788 | GO:GO:0090506 |
| GO:GO:2000032 | InterPro:IPR036388 | UniProt:M4E9N6 | PFAM:PF03501 | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 |
| InterPro:Rps10 | InterPro:S10_plectin_N | UniParc:UPI00025452A8 | InterPro:WH-like_DNA-bd_sf | SEG:seg | : |
Description
AT5G41520 (E=1e-063) | 40S ribosomal protein S10 (RPS10B)
Coordinates
chrA04:-:8396292..8397607
Molecular Weight (calculated)
19788.5 Da
IEP (calculated)
10.117
GRAVY (calculated)
-0.712
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MIMSEENRRA ISKYLFQEGV LFAKKDFNLP QHPLIEGVPN LQVIKLMQSF KSKEYVRETF AWMHYYWFLT NEGIDFLRTY LNLPSEIVPA TLKKQQKPLG
101: RPMGDRPRGP PRSDGERRFG GDKDGYRGGP RSGGEFGDKS GAPADYQPSF RAPGAGSRPG FGRGAGGYGA GPAAGSDLP
101: RPMGDRPRGP PRSDGERRFG GDKDGYRGGP RSGGEFGDKS GAPADYQPSF RAPGAGSRPG FGRGAGGYGA GPAAGSDLP
001: MIISETNRRE ISKYLFKEGV LFAKKDFNLP QHPLIESVPN LQVIKLMQSF KSKEYVRETF AWMHYYWFLT NEGIDFLRTY LNLPSEIVPA TLKKQQKPLG
101: RPFGGGGDRP RGPPRGDGER RFGDRDGYRG GPKSGGEYGD KAGAPADYQP GFRGGAGGAR QGFGRGAGGF GGGAAGSDLP
101: RPFGGGGDRP RGPPRGDGER RFGDRDGYRG GPKSGGEYGD KAGAPADYQP GFRGGAGGAR QGFGRGAGGF GGGAAGSDLP
Arabidopsis Description
RPS10B40S ribosomal protein S10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFS8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.