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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH59964 Soybean nucleus 99.45 98.36
KRH27894 Soybean cytosol 93.92 94.44
KRH77585 Soybean nucleus 93.92 93.92
Solyc12g096540.1.1 Tomato nucleus 83.43 83.89
PGSC0003DMT400075267 Potato cytosol 82.87 83.33
Solyc01g099670.2.1 Tomato nucleus 83.43 82.97
PGSC0003DMT400063697 Potato cytosol 82.87 82.42
GSMUA_Achr11P... Banana cytosol 61.33 81.02
GSMUA_Achr2P08200_001 Banana cytosol 60.77 80.29
Zm00001d025413_P001 Maize extracellular, mitochondrion 77.9 78.77
Os02t0549600-01 Rice cytosol 79.56 78.69
Os04t0430100-01 Rice nucleus 79.56 78.69
EES10818 Sorghum cytosol 79.01 77.72
Os01t0962600-01 Rice plastid 76.24 77.09
Zm00001d003672_P001 Maize plastid 76.8 76.8
Zm00001d011816_P001 Maize plastid 75.69 76.54
Bra025492.1-P Field mustard cytosol 75.69 76.54
AT5G41520.1 Thale cress cytosol 75.14 75.56
Zm00001d042023_P001 Maize plastid 73.48 74.3
EES04270 Sorghum cytosol 72.93 73.74
TraesCS2B01G318500.1 Wheat cytosol, golgi, unclear 75.14 72.34
TraesCS2A01G302600.1 Wheat cytosol 75.14 72.34
TraesCS2D01G301300.1 Wheat cytosol 75.14 72.34
VIT_02s0025g00310.t01 Wine grape cytosol 74.59 71.05
CDY39734 Canola cytosol 75.14 69.74
CDY35037 Canola cytosol 74.03 65.69
HORVU3Hr1G111760.2 Barley mitochondrion 75.14 65.38
CDY44470 Canola cytosol 75.69 65.24
KRH75198 Soybean cytosol, extracellular 19.89 64.29
Zm00001d048305_P001 Maize cytosol 51.93 63.95
HORVU0Hr1G004700.1 Barley mitochondrion 76.24 63.59
GSMUA_AchrUn_... Banana extracellular 79.01 61.37
GSMUA_Achr3P22420_001 Banana endoplasmic reticulum, golgi, plasma membrane 80.66 59.59
GSMUA_Achr8P08040_001 Banana unclear 78.45 58.92
GSMUA_Achr1P16990_001 Banana cytosol, endoplasmic reticulum, nucleus 82.87 54.35
CDX67498 Canola extracellular 74.59 28.91
Protein Annotations
Gene3D:1.10.10.10MapMan:17.1.3.1.11EMBL:ACUP02004755EnsemblPlantsGene:GLYMA_08G017500GO:GO:0000028GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0008150
GO:GO:0009987GO:GO:0016043GO:GO:0022627UniProt:I1KPE7InterPro:IPR036388EnsemblPlants:KRH41234
ProteinID:KRH41234ProteinID:KRH41234.1PFAM:PF03501PANTHER:PTHR12146PANTHER:PTHR12146:SF7InterPro:Rps10
InterPro:S10_plectin_NUniParc:UPI00023C6127InterPro:WH-like_DNA-bd_sfSEG:seg::
Description
hypothetical protein
Coordinates
chr8:-:1411662..1413829
Molecular Weight (calculated)
19904.7 Da
IEP (calculated)
10.162
GRAVY (calculated)
-0.739
Length
181 amino acids
Sequence
(BLAST)
001: MIIPEKNRKE ICKYLFQEGV CFAKKDFNLA KHPEIDVPNL QVIKLMQSFK SREYVRETFA WMHYYWFLTN DGIEFLRTYL NLPSEIVPAT LKKQAKPPGR
101: PFGGPSGDRP RGPPRFEGER RFGGDRDGYR GGPRGGPGGD FGGDKGGAPA DYRPSFGGAG GRPGFGRGSG GFGAPTSSNL P
Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.