Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH59964 | Soybean | nucleus | 99.45 | 98.36 |
KRH27894 | Soybean | cytosol | 93.92 | 94.44 |
KRH77585 | Soybean | nucleus | 93.92 | 93.92 |
Solyc12g096540.1.1 | Tomato | nucleus | 83.43 | 83.89 |
PGSC0003DMT400075267 | Potato | cytosol | 82.87 | 83.33 |
Solyc01g099670.2.1 | Tomato | nucleus | 83.43 | 82.97 |
PGSC0003DMT400063697 | Potato | cytosol | 82.87 | 82.42 |
GSMUA_Achr11P... | Banana | cytosol | 61.33 | 81.02 |
GSMUA_Achr2P08200_001 | Banana | cytosol | 60.77 | 80.29 |
Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 77.9 | 78.77 |
Os02t0549600-01 | Rice | cytosol | 79.56 | 78.69 |
Os04t0430100-01 | Rice | nucleus | 79.56 | 78.69 |
EES10818 | Sorghum | cytosol | 79.01 | 77.72 |
Os01t0962600-01 | Rice | plastid | 76.24 | 77.09 |
Zm00001d003672_P001 | Maize | plastid | 76.8 | 76.8 |
Zm00001d011816_P001 | Maize | plastid | 75.69 | 76.54 |
Bra025492.1-P | Field mustard | cytosol | 75.69 | 76.54 |
AT5G41520.1 | Thale cress | cytosol | 75.14 | 75.56 |
Zm00001d042023_P001 | Maize | plastid | 73.48 | 74.3 |
EES04270 | Sorghum | cytosol | 72.93 | 73.74 |
TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 75.14 | 72.34 |
TraesCS2A01G302600.1 | Wheat | cytosol | 75.14 | 72.34 |
TraesCS2D01G301300.1 | Wheat | cytosol | 75.14 | 72.34 |
VIT_02s0025g00310.t01 | Wine grape | cytosol | 74.59 | 71.05 |
CDY39734 | Canola | cytosol | 75.14 | 69.74 |
CDY35037 | Canola | cytosol | 74.03 | 65.69 |
HORVU3Hr1G111760.2 | Barley | mitochondrion | 75.14 | 65.38 |
CDY44470 | Canola | cytosol | 75.69 | 65.24 |
KRH75198 | Soybean | cytosol, extracellular | 19.89 | 64.29 |
Zm00001d048305_P001 | Maize | cytosol | 51.93 | 63.95 |
HORVU0Hr1G004700.1 | Barley | mitochondrion | 76.24 | 63.59 |
GSMUA_AchrUn_... | Banana | extracellular | 79.01 | 61.37 |
GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 80.66 | 59.59 |
GSMUA_Achr8P08040_001 | Banana | unclear | 78.45 | 58.92 |
GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 82.87 | 54.35 |
CDX67498 | Canola | extracellular | 74.59 | 28.91 |
Protein Annotations
Gene3D:1.10.10.10 | MapMan:17.1.3.1.11 | EMBL:ACUP02004755 | EnsemblPlantsGene:GLYMA_08G017500 | GO:GO:0000028 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0008150 |
GO:GO:0009987 | GO:GO:0016043 | GO:GO:0022627 | UniProt:I1KPE7 | InterPro:IPR036388 | EnsemblPlants:KRH41234 |
ProteinID:KRH41234 | ProteinID:KRH41234.1 | PFAM:PF03501 | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | InterPro:Rps10 |
InterPro:S10_plectin_N | UniParc:UPI00023C6127 | InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr8:-:1411662..1413829
Molecular Weight (calculated)
19904.7 Da
IEP (calculated)
10.162
GRAVY (calculated)
-0.739
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIPEKNRKE ICKYLFQEGV CFAKKDFNLA KHPEIDVPNL QVIKLMQSFK SREYVRETFA WMHYYWFLTN DGIEFLRTYL NLPSEIVPAT LKKQAKPPGR
101: PFGGPSGDRP RGPPRFEGER RFGGDRDGYR GGPRGGPGGD FGGDKGGAPA DYRPSFGGAG GRPGFGRGSG GFGAPTSSNL P
101: PFGGPSGDRP RGPPRFEGER RFGGDRDGYR GGPRGGPGGD FGGDKGGAPA DYRPSFGGAG GRPGFGRGSG GFGAPTSSNL P
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.