Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 46.01 | 92.7 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 45.29 | 91.24 |
| Os02t0549600-01 | Rice | cytosol | 56.88 | 85.79 |
| Os04t0430100-01 | Rice | nucleus | 56.88 | 85.79 |
| VIT_16s0050g01160.t01 | Wine grape | cytosol | 55.8 | 85.56 |
| Os01t0962600-01 | Rice | plastid | 55.07 | 84.92 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 55.07 | 84.92 |
| EES10818 | Sorghum | cytosol | 56.16 | 84.24 |
| Zm00001d003672_P001 | Maize | plastid | 54.71 | 83.43 |
| KRH41234 | Soybean | nucleus | 54.35 | 82.87 |
| Solyc12g096540.1.1 | Tomato | nucleus | 53.99 | 82.78 |
| KRH27894 | Soybean | cytosol | 53.99 | 82.78 |
| Zm00001d011816_P001 | Maize | plastid | 53.62 | 82.68 |
| KRH77585 | Soybean | nucleus | 53.99 | 82.32 |
| PGSC0003DMT400075267 | Potato | cytosol | 53.62 | 82.22 |
| KRH59964 | Soybean | nucleus | 54.35 | 81.97 |
| Solyc01g099670.2.1 | Tomato | nucleus | 53.99 | 81.87 |
| EES04270 | Sorghum | cytosol | 52.9 | 81.56 |
| PGSC0003DMT400063697 | Potato | cytosol | 53.62 | 81.32 |
| Zm00001d042023_P001 | Maize | plastid | 51.09 | 78.77 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 53.62 | 78.72 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 53.62 | 78.72 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 53.62 | 78.72 |
| AT4G25740.1 | Thale cress | cytosol | 50.36 | 78.53 |
| Bra010448.1-P | Field mustard | cytosol | 50.0 | 76.24 |
| Bra013915.1-P | Field mustard | cytosol | 49.64 | 76.11 |
| Bra019143.1-P | Field mustard | cytosol | 49.64 | 75.69 |
| AT5G52650.1 | Thale cress | cytosol | 48.91 | 75.42 |
| Bra029112.1-P | Field mustard | cytosol | 48.19 | 75.14 |
| GSMUA_AchrUn_... | Banana | extracellular | 63.04 | 74.68 |
| Bra003118.1-P | Field mustard | cytosol | 47.83 | 73.74 |
| VIT_02s0025g00310.t01 | Wine grape | cytosol | 48.91 | 71.05 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 63.04 | 71.02 |
| Bra025492.1-P | Field mustard | cytosol | 46.01 | 70.95 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 61.59 | 70.54 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 52.9 | 70.19 |
| CDY27840 | Canola | cytosol | 50.0 | 70.05 |
| AT5G41520.1 | Thale cress | cytosol | 45.65 | 70.0 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 54.35 | 69.12 |
| Zm00001d048305_P001 | Maize | cytosol | 36.59 | 68.71 |
| CDY49476 | Canola | cytosol | 50.72 | 67.63 |
| CDY39734 | Canola | cytosol | 46.01 | 65.13 |
| CDX89397 | Canola | extracellular | 50.0 | 64.79 |
| CDX92731 | Canola | cytosol | 51.81 | 62.72 |
| CDY56154 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 49.28 | 62.39 |
| CDY35037 | Canola | cytosol | 46.01 | 62.25 |
| CDY44470 | Canola | cytosol | 46.38 | 60.95 |
| CDX94419 | Canola | mitochondrion | 50.72 | 58.33 |
| CDY51832 | Canola | plastid | 48.91 | 57.2 |
| CDY50187 | Canola | endoplasmic reticulum, golgi | 51.45 | 56.8 |
| CDY66010 | Canola | cytosol | 51.45 | 55.25 |
| GSMUA_Achr8P32790_001 | Banana | mitochondrion | 27.9 | 36.49 |
| CDX67498 | Canola | extracellular | 46.74 | 27.62 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P16990_001 | EnsemblPlants:GSMUA_Achr1T16990_001 | EnsemblPlantsGene:GSMUA_Achr1G16990_001 | Gene3D:1.10.10.10 | InterPro:IPR036388 | InterPro:Rps10 |
| InterPro:S10_plectin_N | InterPro:WH-like_DNA-bd_sf | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | PFAM:PF03501 | SEG:seg |
| UniParc:UPI000294ADC1 | UniProt:M0S0K7 | MapMan:17.1.3.1.11 | : | : | : |
Description
40S ribosomal protein S10 [Source:GMGC_GENE;Acc:GSMUA_Achr1G16990_001]
Coordinates
chr1:-:12668020..12673063
Molecular Weight (calculated)
30568.8 Da
IEP (calculated)
9.577
GRAVY (calculated)
-0.435
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVFPAHSPL TQNYGVELVF PVYKMLFSHK NGVSTIDPEM LRMCMCLEAC IGCLTWAASL LSTRGKKLGF ALRFPWSALP RDSCEGCDLS LITMIIPKKN
101: RHEICKYLFQ EGVLFAKKDY NLAKHPEIDV PNLQVIKLMQ SFKSREYVRE TFAWQHYYWY LTNDGIEYLR TYLNLPSEIV PATLKKSARP PARPFGSGPP
201: GDRPRGPPRF EGDRPRFGDR DGYRGGPRPG GPPGDAGDKG GAPPEFQPSF RGTGGRPGFG RGGGGYGAGP ASASFQ
101: RHEICKYLFQ EGVLFAKKDY NLAKHPEIDV PNLQVIKLMQ SFKSREYVRE TFAWQHYYWY LTNDGIEYLR TYLNLPSEIV PATLKKSARP PARPFGSGPP
201: GDRPRGPPRF EGDRPRFGDR DGYRGGPRPG GPPGDAGDKG GAPPEFQPSF RGTGGRPGFG RGGGGYGAGP ASASFQ
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.