CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25761
CDY36901
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25740.1	CDY04768	AT1G22920.1	21798944
AT4G25740.1	CDY21400	AT1G22920.1	21798944
AT4G25740.1	CDY25761	AT1G22920.1	21798944
AT4G25740.1	CDY36901	AT3G48150.1	21798944
AT4G25740.1	CDY44976	AT3G48150.1	21798944
AT4G25740.1	CDY58069	AT3G48150.1	21798944
AT4G25740.1	CDY58070	AT3G48150.1	21798944
AT4G25740.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019143.1-P	Field mustard	cytosol	79.39	100.0
AT4G25740.1	Thale cress	cytosol	72.81	93.79
CDY49476	Canola	cytosol	77.19	85.02
CDY27840	Canola	cytosol	72.81	84.26
CDX89397	Canola	extracellular	76.75	82.16
CDY56154	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	74.56	77.98
CDY50187	Canola	endoplasmic reticulum, golgi	85.09	77.6
Os01t0962600-01	Rice	plastid	60.09	76.54
Zm00001d025413_P001	Maize	extracellular, mitochondrion	59.21	75.42
Os04t0430100-01	Rice	nucleus	60.53	75.41
Os02t0549600-01	Rice	cytosol	60.53	75.41
Zm00001d011816_P001	Maize	plastid	58.77	74.86
GSMUA_Achr11P...	Banana	cytosol	44.74	74.45
EES10818	Sorghum	cytosol	59.65	73.91
EES04270	Sorghum	cytosol	57.89	73.74
Zm00001d042023_P001	Maize	plastid	57.89	73.74
CDX94419	Canola	mitochondrion	77.19	73.33
Zm00001d003672_P001	Maize	plastid	57.89	72.93
TraesCS2D01G301300.1	Wheat	cytosol	60.09	72.87
TraesCS2A01G302600.1	Wheat	cytosol	59.65	72.34
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	59.65	72.34
GSMUA_Achr2P08200_001	Banana	cytosol	43.42	72.26
CDY51832	Canola	plastid	74.12	71.61
CDY39734	Canola	cytosol	60.96	71.28
CDY35037	Canola	cytosol	61.84	69.12
CDY66010	Canola	cytosol	76.75	68.09
HORVU3Hr1G111760.2	Barley	mitochondrion	60.96	66.83
CDY44470	Canola	cytosol	60.53	65.71
HORVU0Hr1G004700.1	Barley	mitochondrion	61.84	64.98
Zm00001d048305_P001	Maize	cytosol	40.35	62.59
GSMUA_Achr8P08040_001	Banana	unclear	60.96	57.68
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	61.84	57.55
GSMUA_AchrUn_...	Banana	extracellular	57.89	56.65
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	62.72	51.81
CDX67498	Canola	extracellular	62.72	30.62

Protein Annotations

EnsemblPlants:CDX92731	EnsemblPlantsGene:GSBRNA2T00154551001	Gene3D:1.10.10.10	InterPro:IPR036388	InterPro:Rps10	InterPro:S10_plectin_N
InterPro:WH-like_DNA-bd_sf	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	PFAM:PF03501	ProteinID:CDX92731	ProteinID:CDX92731.1
SEG:seg	UniParc:UPI0004EDFFE2	MapMan:17.1.3.1.11	:	:	:

Description

BnaC07g39890D

Coordinates

chrLK031873:-:537766..539224

Molecular Weight (calculated)

25171.1 Da

IEP (calculated)

10.273

GRAVY (calculated)

-0.602

Length

228 amino acids

Sequence
(BLAST)

001: MNSIIKINWY DEIQKSNLEP LKLSASFDQK KSKALCPFAA KTLSTKTMII SETNRREICK YLFKEGVLFA KKDFNLPKHP LIESVPNLQV IKLMQSFKSK
101: EYVRETFAWM HYYWFLTNEG IEFLRTYLNL PSDVVPATLK KSAKPIGRPF GGPPGDRPRG PPRFDGDRPR YGDRDGYRGG QRGGDVGGEK GGAPADYQPS
201: FQGGGGRPGF GRGAGGFSAA APSGSGLP

Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)

001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP

Arabidopsis Description

RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.