Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- mitochondrion 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52650.1 | CDX90062 | AT1G01800.1 | 21798944 |
| AT5G52650.1 | CDY15148 | AT1G01800.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029112.1-P | Field mustard | cytosol | 80.73 | 99.44 |
| AT5G52650.1 | Thale cress | cytosol | 74.31 | 90.5 |
| CDY27840 | Canola | cytosol | 77.98 | 86.29 |
| CDY51832 | Canola | plastid | 92.66 | 85.59 |
| CDY49476 | Canola | cytosol | 77.06 | 81.16 |
| CDX89397 | Canola | extracellular | 76.61 | 78.4 |
| CDX92731 | Canola | cytosol | 77.98 | 74.56 |
| Os01t0962600-01 | Rice | plastid | 60.55 | 73.74 |
| Os04t0430100-01 | Rice | nucleus | 61.47 | 73.22 |
| Os02t0549600-01 | Rice | cytosol | 61.47 | 73.22 |
| GSMUA_Achr11P... | Banana | cytosol | 45.41 | 72.26 |
| Zm00001d011816_P001 | Maize | plastid | 59.17 | 72.07 |
| EES10818 | Sorghum | cytosol | 60.55 | 71.74 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 58.72 | 71.51 |
| EES04270 | Sorghum | cytosol | 58.26 | 70.95 |
| Zm00001d003672_P001 | Maize | plastid | 58.72 | 70.72 |
| Zm00001d042023_P001 | Maize | plastid | 57.8 | 70.39 |
| CDY39734 | Canola | cytosol | 62.84 | 70.26 |
| CDX94419 | Canola | mitochondrion | 77.06 | 70.0 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 60.09 | 69.68 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 60.09 | 69.68 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 60.09 | 69.68 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 43.58 | 69.34 |
| CDY35037 | Canola | cytosol | 63.76 | 68.14 |
| CDY50187 | Canola | endoplasmic reticulum, golgi | 77.52 | 67.6 |
| CDY44470 | Canola | cytosol | 63.76 | 66.19 |
| CDY66010 | Canola | cytosol | 77.06 | 65.37 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 60.55 | 63.46 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 62.84 | 63.13 |
| Zm00001d048305_P001 | Maize | cytosol | 42.2 | 62.59 |
| GSMUA_AchrUn_... | Banana | extracellular | 61.47 | 57.51 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 62.39 | 55.51 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 61.01 | 55.19 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 62.39 | 49.28 |
| CDX67498 | Canola | extracellular | 65.14 | 30.41 |
Protein Annotations
| EnsemblPlants:CDY56154 | EnsemblPlantsGene:GSBRNA2T00017885001 | Gene3D:1.10.10.10 | InterPro:IPR036388 | InterPro:Rps10 | InterPro:S10_plectin_N |
| InterPro:WH-like_DNA-bd_sf | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | PFAM:PF03501 | ProteinID:CDY56154 | ProteinID:CDY56154.1 |
| SEG:seg | UniParc:UPI0004EE260E | UniProt:A0A078IZR7 | MapMan:17.1.3.1.11 | : | : |
Description
BnaA03g12560DBnaA03g12560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZR7]
Coordinates
chrLK033464:-:9415..10897
Molecular Weight (calculated)
24300.2 Da
IEP (calculated)
10.573
GRAVY (calculated)
-0.587
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MKYALSNRKT LLFVFGILTK ANNHFLPLRL FSKKARPHSS TMIMSEENRR EICKYLFKEG VLFAKKDFNL AKHPLIESVP NLQVIKLMQS FKSKEYVRET
101: FAWMHYYWFL TNEGIEFLRT YLNLPSDVVP ATLKKSAKPI GRPFGGGPPG DRPRGPRFEG GDRPRYGDRD GYRRGGEGEK GGAPADYQPS FQGSGGRPGF
201: GRGAGGYSAA APSGSGLP
101: FAWMHYYWFL TNEGIEFLRT YLNLPSDVVP ATLKKSAKPI GRPFGGGPPG DRPRGPRFEG GDRPRYGDRD GYRRGGEGEK GGAPADYQPS FQGSGGRPGF
201: GRGAGGYSAA APSGSGLP
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPRGGDE KGGAPADFQP SFQGGGGRPG FGRGAGGYSA AAPSGSGFP
101: PFGGPRGGDE KGGAPADFQP SFQGGGGRPG FGRGAGGYSA AAPSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.