CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25761
CDY36901
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25740.1	CDY04768	AT1G22920.1	21798944
AT4G25740.1	CDY21400	AT1G22920.1	21798944
AT4G25740.1	CDY25761	AT1G22920.1	21798944
AT4G25740.1	CDY36901	AT3G48150.1	21798944
AT4G25740.1	CDY44976	AT3G48150.1	21798944
AT4G25740.1	CDY58069	AT3G48150.1	21798944
AT4G25740.1	CDY58070	AT3G48150.1	21798944
AT4G25740.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G25740.1	Thale cress	cytosol	67.92	92.09
CDX89397	Canola	extracellular	81.67	92.02
CDY49476	Canola	cytosol	73.33	85.02
CDY27840	Canola	cytosol	69.58	84.77
CDX92731	Canola	cytosol	73.33	77.19
CDY56154	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	70.0	77.06
Os01t0962600-01	Rice	plastid	56.67	75.98
Os04t0430100-01	Rice	nucleus	57.5	75.41
Os02t0549600-01	Rice	cytosol	57.5	75.41
GSMUA_Achr11P...	Banana	cytosol	42.5	74.45
Zm00001d011816_P001	Maize	plastid	55.42	74.3
Zm00001d025413_P001	Maize	extracellular, mitochondrion	55.42	74.3
EES10818	Sorghum	cytosol	56.67	73.91
EES04270	Sorghum	cytosol	54.58	73.18
Zm00001d003672_P001	Maize	plastid	55.0	72.93
Zm00001d042023_P001	Maize	plastid	54.17	72.63
GSMUA_Achr2P08200_001	Banana	cytosol	41.25	72.26
CDY50187	Canola	endoplasmic reticulum, golgi	75.0	72.0
TraesCS2D01G301300.1	Wheat	cytosol	55.83	71.28
TraesCS2A01G302600.1	Wheat	cytosol	55.42	70.74
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	55.42	70.74
CDY51832	Canola	plastid	69.17	70.34
CDY39734	Canola	cytosol	56.67	69.74
CDY66010	Canola	cytosol	73.75	68.87
HORVU3Hr1G111760.2	Barley	mitochondrion	57.5	66.35
CDY35037	Canola	cytosol	56.25	66.18
CDY44470	Canola	cytosol	56.67	64.76
Zm00001d048305_P001	Maize	cytosol	38.75	63.27
HORVU0Hr1G004700.1	Barley	mitochondrion	57.08	63.13
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	59.58	58.37
GSMUA_AchrUn_...	Banana	extracellular	55.83	57.51
GSMUA_Achr8P08040_001	Banana	unclear	57.5	57.26
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	58.33	50.72
CDX67498	Canola	extracellular	57.08	29.34

Protein Annotations

EnsemblPlants:CDX94419	EnsemblPlantsGene:GSBRNA2T00157561001	Gene3D:1.10.10.10	InterPro:IPR036388	InterPro:Rps10	InterPro:S10_plectin_N
InterPro:WH-like_DNA-bd_sf	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	PFAM:PF03501	ProteinID:CDX94419	ProteinID:CDX94419.1
SEG:seg	UniParc:UPI0004EDAE5A	MapMan:17.1.3.1.11	:	:	:

Description

BnaC01g17650D

Coordinates

chrLK031881:+:1074463..1076132

Molecular Weight (calculated)

26431.0 Da

IEP (calculated)

10.394

GRAVY (calculated)

-0.543

Length

240 amino acids

Sequence
(BLAST)

001: MLLALLQVSG HVQCRLHKIP PKPSTGGKQL LQFSAQIKPK YLCDKRSSCL PLCSESTTNK KMIITETNRR EICKYLFKEG VLFAKKDFNL PKHPLIESVP
101: NLQVIKLMQS FKSKEYVRET FAWMHYYWFL TNEGIEFLRT YLNLPSDVVP ATLKKSAKPI GRPFGGPPGD RPRGPRFEGD RPRFGDRDGY RGPRGGDAAG
201: EKGGAPADYQ PSFQGGGGRP GFGRGAGGFN AAAPSGSGLP

Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)

001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP

Arabidopsis Description

RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.