CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25761
CDY36901
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25740.1	CDY04768	AT1G22920.1	21798944
AT4G25740.1	CDY21400	AT1G22920.1	21798944
AT4G25740.1	CDY25761	AT1G22920.1	21798944
AT4G25740.1	CDY36901	AT3G48150.1	21798944
AT4G25740.1	CDY44976	AT3G48150.1	21798944
AT4G25740.1	CDY58069	AT3G48150.1	21798944
AT4G25740.1	CDY58070	AT3G48150.1	21798944
AT4G25740.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013915.1-P	Field mustard	cytosol	83.1	98.33
AT4G25740.1	Thale cress	cytosol	76.53	92.09
CDY49476	Canola	cytosol	83.57	85.99
CDY27840	Canola	cytosol	78.87	85.28
CDX94419	Canola	mitochondrion	92.02	81.67
CDX92731	Canola	cytosol	82.16	76.75
CDY56154	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	78.4	76.61
Os01t0962600-01	Rice	plastid	63.38	75.42
Os02t0549600-01	Rice	cytosol	64.79	75.41
Os04t0430100-01	Rice	nucleus	64.79	75.41
GSMUA_Achr11P...	Banana	cytosol	48.36	75.18
EES10818	Sorghum	cytosol	63.85	73.91
Zm00001d011816_P001	Maize	plastid	61.97	73.74
Zm00001d025413_P001	Maize	extracellular, mitochondrion	61.97	73.74
Zm00001d003672_P001	Maize	plastid	61.97	72.93
GSMUA_Achr2P08200_001	Banana	cytosol	46.48	72.26
EES04270	Sorghum	cytosol	60.56	72.07
Zm00001d042023_P001	Maize	plastid	60.56	72.07
CDY51832	Canola	plastid	78.87	71.19
CDY50187	Canola	endoplasmic reticulum, golgi	82.63	70.4
TraesCS2D01G301300.1	Wheat	cytosol	61.97	70.21
TraesCS2A01G302600.1	Wheat	cytosol	61.97	70.21
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	61.97	70.21
CDY39734	Canola	cytosol	63.38	69.23
CDY66010	Canola	cytosol	81.69	67.7
CDY35037	Canola	cytosol	63.38	66.18
HORVU3Hr1G111760.2	Barley	mitochondrion	64.32	65.87
CDY44470	Canola	cytosol	64.79	65.71
Zm00001d048305_P001	Maize	cytosol	43.66	63.27
HORVU0Hr1G004700.1	Barley	mitochondrion	62.91	61.75
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	66.2	57.55
GSMUA_Achr8P08040_001	Banana	unclear	64.32	56.85
GSMUA_AchrUn_...	Banana	extracellular	61.97	56.65
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	64.79	50.0
CDX67498	Canola	extracellular	63.85	29.12

Protein Annotations

EnsemblPlants:CDX89397	EnsemblPlantsGene:GSBRNA2T00149632001	Gene3D:1.10.10.10	InterPro:IPR036388	InterPro:Rps10	InterPro:S10_plectin_N
InterPro:WH-like_DNA-bd_sf	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	PFAM:PF03501	ProteinID:CDX89397	ProteinID:CDX89397.1
SEG:seg	UniParc:UPI0004EE423D	MapMan:17.1.3.1.11	:	:	:

Description

BnaA01g14960D

Coordinates

chrLK031858:+:1416083..1417808

Molecular Weight (calculated)

23260.8 Da

IEP (calculated)

10.156

GRAVY (calculated)

-0.542

Length

213 amino acids

Sequence
(BLAST)

001: MLLGITTGLG SRSLCDKRSS CLPLCSESTT NKKMIITETN RREICKYLFK EGVLFAKKDF NLPKHPLIES VPNLQVIKLM QSFKSKEYVR ETFAWMHYYW
101: FLTNEGIEFL RTYLNLPSDV VPATLKKSAK PIGRPFGGPP GDRPRGPRFE GDRPRFSDRD GYRGGARGGD AAGEKGGAPA DYQPSFQGSG GRPGFGRGAG
201: GYSAAAPSGS GLP

Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)

001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP

Arabidopsis Description

RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.