Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plastid: 22065420 plastid: 23198870 plasma membrane: 23353019 mitochondrion: 27297264 |
msms PMID:
23353019
doi
University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 94.48 | 95.53 |
| EES10818 | Sorghum | cytosol | 96.69 | 95.11 |
| Os02t0549600-01 | Rice | cytosol | 94.48 | 93.44 |
| Os04t0430100-01 | Rice | nucleus | 94.48 | 93.44 |
| Zm00001d011816_P001 | Maize | plastid | 83.98 | 84.92 |
| GSMUA_Achr11P... | Banana | cytosol | 63.54 | 83.94 |
| Zm00001d042023_P001 | Maize | plastid | 81.77 | 82.68 |
| VIT_16s0050g01160.t01 | Wine grape | cytosol | 81.22 | 81.67 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 84.53 | 81.38 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 84.53 | 81.38 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 84.53 | 81.38 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 61.33 | 81.02 |
| Solyc01g099670.2.1 | Tomato | nucleus | 80.11 | 79.67 |
| PGSC0003DMT400063697 | Potato | cytosol | 79.56 | 79.12 |
| Solyc12g096540.1.1 | Tomato | nucleus | 78.45 | 78.89 |
| PGSC0003DMT400075267 | Potato | cytosol | 77.9 | 78.33 |
| KRH27894 | Soybean | cytosol | 76.8 | 77.22 |
| KRH77585 | Soybean | nucleus | 76.8 | 76.8 |
| KRH41234 | Soybean | nucleus | 76.8 | 76.8 |
| KRH59964 | Soybean | nucleus | 76.8 | 75.96 |
| Zm00001d048305_P001 | Maize | cytosol | 60.77 | 74.83 |
| AT4G25740.1 | Thale cress | cytosol | 72.38 | 74.01 |
| Bra013915.1-P | Field mustard | cytosol | 72.93 | 73.33 |
| AT5G52650.1 | Thale cress | cytosol | 72.38 | 73.18 |
| Bra019143.1-P | Field mustard | cytosol | 72.93 | 72.93 |
| Bra010448.1-P | Field mustard | cytosol | 72.93 | 72.93 |
| Bra029112.1-P | Field mustard | cytosol | 70.72 | 72.32 |
| Bra003118.1-P | Field mustard | cytosol | 69.06 | 69.83 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 83.43 | 69.59 |
| VIT_02s0025g00310.t01 | Wine grape | cytosol | 70.72 | 67.37 |
| AT5G41520.1 | Thale cress | cytosol | 66.85 | 67.22 |
| Bra025492.1-P | Field mustard | cytosol | 66.3 | 67.04 |
| CDY27840 | Canola | cytosol | 71.82 | 65.99 |
| CDY49476 | Canola | cytosol | 72.93 | 63.77 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 83.43 | 62.66 |
| GSMUA_AchrUn_... | Banana | extracellular | 80.11 | 62.23 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 83.98 | 62.04 |
| CDX89397 | Canola | extracellular | 72.93 | 61.97 |
| CDY39734 | Canola | cytosol | 66.3 | 61.54 |
| CDY56154 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 70.72 | 58.72 |
| CDY44470 | Canola | cytosol | 67.4 | 58.1 |
| CDX92731 | Canola | cytosol | 72.93 | 57.89 |
| CDY35037 | Canola | cytosol | 65.19 | 57.84 |
| CDX94419 | Canola | mitochondrion | 72.93 | 55.0 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 83.43 | 54.71 |
| CDY51832 | Canola | plastid | 70.72 | 54.24 |
| CDY50187 | Canola | endoplasmic reticulum, golgi | 72.38 | 52.4 |
| CDY66010 | Canola | cytosol | 72.38 | 50.97 |
| CDX67498 | Canola | extracellular | 66.3 | 25.7 |
Protein Annotations
| EMBL:BT067597 | EnsemblPlants:Zm00001d003672_P001 | EnsemblPlants:Zm00001d003672_T001 | EnsemblPlantsGene:Zm00001d003672 | Gene3D:1.10.10.10 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | InterPro:IPR036388 | InterPro:Rps10 |
| InterPro:S10_plectin_N | InterPro:WH-like_DNA-bd_sf | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | PFAM:PF03501 | ProteinID:ONM17457.1 |
| SEG:seg | UniParc:UPI000195CE60 | UniProt:C0PH28 | MapMan:17.1.3.1.11 | : | : |
Description
40S ribosomal protein S10-1
Coordinates
chr2:-:53480032..53483738
Molecular Weight (calculated)
20227.9 Da
IEP (calculated)
10.180
GRAVY (calculated)
-0.856
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIPKKNRNE ICKYLFKEGV LYAKKDYNLA KHPQIDVPNL QVIKLMQSFK SKEYVRETFS WQYYYWYLTN DGIEHLRNYL NLPSEIVPAT LKKSARPLGR
101: PFGSGPPGDR PRGPGRFEDR PRFGDRDEYR GGPRGAPGDF GGDKSGAPAE FQPSFRSSGA RPGFGRGGGS GFGAGPTSSM E
101: PFGSGPPGDR PRGPGRFEDR PRFGDRDEYR GGPRGAPGDF GGDKSGAPAE FQPSFRSSGA RPGFGRGGGS GFGAGPTSSM E
001: MIISEANRKE ICKYLFKEGV CFAKKDFNLA KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRS RGPRHEGGDR PRFGDRDGYR AGPRAGGEFG GEKGGAPADY QPSFQGSGRG FGRGAGGYSA AAPSGSGLP
101: PFGGPPGDRS RGPRHEGGDR PRFGDRDGYR AGPRAGGEFG GEKGGAPADY QPSFQGSGRG FGRGAGGYSA AAPSGSGLP
Arabidopsis Description
RPS10C40S ribosomal protein S10-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTF2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.