Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra032567.1-P | |
| Bra032573.1-P | |
| Bra033230.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52650.1 | Bra032567.1-P | AT1G01800.1 | 21798944 |
| AT5G52650.1 | Bra032573.1-P | AT1G01800.1 | 21798944 |
| AT5G52650.1 | Bra033230.1-P | AT1G01800.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019143.1-P | Field mustard | cytosol | 94.92 | 92.82 |
| Bra003118.1-P | Field mustard | cytosol | 92.66 | 91.62 |
| Bra010448.1-P | Field mustard | cytosol | 93.22 | 91.16 |
| Bra013915.1-P | Field mustard | cytosol | 91.53 | 90.0 |
| AT5G52650.1 | Thale cress | cytosol | 90.96 | 89.94 |
| CDY56154 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 99.44 | 80.73 |
| Bra025492.1-P | Field mustard | cytosol | 76.84 | 75.98 |
| CDY51832 | Canola | plastid | 99.44 | 74.58 |
| Os01t0962600-01 | Rice | plastid | 74.58 | 73.74 |
| Os04t0430100-01 | Rice | nucleus | 75.71 | 73.22 |
| Os02t0549600-01 | Rice | cytosol | 75.71 | 73.22 |
| Zm00001d011816_P001 | Maize | plastid | 72.88 | 72.07 |
| EES10818 | Sorghum | cytosol | 74.58 | 71.74 |
| GSMUA_Achr11P... | Banana | cytosol | 55.37 | 71.53 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 72.32 | 71.51 |
| EES04270 | Sorghum | cytosol | 71.75 | 70.95 |
| Zm00001d003672_P001 | Maize | plastid | 72.32 | 70.72 |
| Zm00001d042023_P001 | Maize | plastid | 71.19 | 70.39 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 74.01 | 69.68 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 74.01 | 69.68 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 74.01 | 69.68 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 53.11 | 68.61 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 74.01 | 62.98 |
| Zm00001d048305_P001 | Maize | cytosol | 51.98 | 62.59 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 74.58 | 60.83 |
| GSMUA_AchrUn_... | Banana | extracellular | 72.32 | 54.94 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 74.01 | 54.36 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 75.14 | 54.29 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 75.14 | 48.19 |
Protein Annotations
| EnsemblPlants:Bra029112.1 | EnsemblPlants:Bra029112.1-P | EnsemblPlantsGene:Bra029112 | Gene3D:1.10.10.10 | InterPro:IPR036388 | InterPro:Rps10 |
| InterPro:S10_plectin_N | InterPro:WH-like_DNA-bd_sf | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | PFAM:PF03501 | SEG:seg |
| UniParc:UPI0001BA88AE | UniProt:M4EJZ5 | MapMan:17.1.3.1.11 | : | : | : |
Description
AT5G52650 (E=1e-048) | 40S ribosomal protein S10 (RPS10C)
Coordinates
chrA03:+:6413914..6414861
Molecular Weight (calculated)
19554.3 Da
IEP (calculated)
10.100
GRAVY (calculated)
-0.664
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MIMSEENRRE ICKYLFKEGV LFAKKDFNLA KHPLIESVPN LQVIKLMQSF KSKEYVRETF AWMHYYWFLT NEGIEFLRTY LNLPSDVVPA TLKKSAKPIG
101: RPFGGGPPGD RPRGPRFEGG DRPRYGDRDG YRRGGEGEKG GAPADYQPSF QGSGGRPGFG RGAGGFSAAA PSGSGLP
101: RPFGGGPPGD RPRGPRFEGG DRPRYGDRDG YRRGGEGEKG GAPADYQPSF QGSGGRPGFG RGAGGFSAAA PSGSGLP
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.