Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
21433289
plasma membrane: 27800704 plastid: 27992503 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011816_P001 | Maize | plastid | 94.97 | 94.97 |
| EES04270 | Sorghum | cytosol | 93.3 | 93.3 |
| Zm00001d042023_P001 | Maize | plastid | 92.18 | 92.18 |
| Os04t0430100-01 | Rice | nucleus | 89.39 | 87.43 |
| Os02t0549600-01 | Rice | cytosol | 89.39 | 87.43 |
| GSMUA_Achr11P... | Banana | cytosol | 64.8 | 84.67 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 63.69 | 83.21 |
| VIT_16s0050g01160.t01 | Wine grape | cytosol | 82.12 | 81.67 |
| Solyc01g099670.2.1 | Tomato | nucleus | 82.68 | 81.32 |
| PGSC0003DMT400075267 | Potato | cytosol | 81.56 | 81.11 |
| PGSC0003DMT400063697 | Potato | cytosol | 82.12 | 80.77 |
| Solyc12g096540.1.1 | Tomato | nucleus | 81.01 | 80.56 |
| AT4G25740.1 | Thale cress | cytosol | 75.98 | 76.84 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 88.83 | 76.44 |
| KRH41234 | Soybean | nucleus | 77.09 | 76.24 |
| KRH27894 | Soybean | cytosol | 76.54 | 76.11 |
| Bra019143.1-P | Field mustard | cytosol | 76.54 | 75.69 |
| KRH77585 | Soybean | nucleus | 76.54 | 75.69 |
| AT5G52650.1 | Thale cress | cytosol | 75.42 | 75.42 |
| KRH59964 | Soybean | nucleus | 77.09 | 75.41 |
| Bra013915.1-P | Field mustard | cytosol | 75.42 | 75.0 |
| Bra010448.1-P | Field mustard | cytosol | 75.42 | 74.59 |
| Bra029112.1-P | Field mustard | cytosol | 73.74 | 74.58 |
| Bra003118.1-P | Field mustard | cytosol | 73.18 | 73.18 |
| AT5G41520.1 | Thale cress | cytosol | 69.27 | 68.89 |
| Bra025492.1-P | Field mustard | cytosol | 68.72 | 68.72 |
| VIT_02s0025g00310.t01 | Wine grape | cytosol | 72.63 | 68.42 |
| CDY27840 | Canola | cytosol | 74.86 | 68.02 |
| CDY49476 | Canola | cytosol | 75.42 | 65.22 |
| GSMUA_AchrUn_... | Banana | extracellular | 82.68 | 63.52 |
| CDX89397 | Canola | extracellular | 75.42 | 63.38 |
| CDY39734 | Canola | cytosol | 68.72 | 63.08 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 84.36 | 62.66 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 85.47 | 62.45 |
| CDY56154 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 73.74 | 60.55 |
| CDY35037 | Canola | cytosol | 68.72 | 60.29 |
| CDX92731 | Canola | cytosol | 76.54 | 60.09 |
| CDY44470 | Canola | cytosol | 70.39 | 60.0 |
| CDX94419 | Canola | mitochondrion | 75.98 | 56.67 |
| CDY51832 | Canola | plastid | 73.74 | 55.93 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 84.92 | 55.07 |
| CDY50187 | Canola | endoplasmic reticulum, golgi | 75.98 | 54.4 |
| CDY66010 | Canola | cytosol | 74.86 | 52.14 |
| CDX67498 | Canola | extracellular | 69.27 | 26.55 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.1.3.1.11 | EntrezGene:4324553 | ProteinID:BAB63622.1 | ProteinID:BAF07394.1 | ProteinID:BAS76349.1 |
| ProteinID:EAZ14924.1 | GO:GO:0000028 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0022627 |
| InterPro:IPR036388 | EnsemblPlantsGene:Os01g0962600 | EnsemblPlants:Os01t0962600-01 | PFAM:PF03501 | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 |
| UniProt:Q94DM7 | InterPro:Rps10 | InterPro:S10_plectin_N | UniParc:UPI00000A6137 | InterPro:WH-like_DNA-bd_sf | RefSeq:XP_015623648.1 |
| SEG:seg | : | : | : | : | : |
Description
Similar to 40S ribosomal protein S10-1. (Os01t0962600-01)
Coordinates
chr1:-:42425152..42427345
Molecular Weight (calculated)
19911.6 Da
IEP (calculated)
10.305
GRAVY (calculated)
-0.892
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MIISKKNRRE ICKYLFHEGV LYAKKDYNLA KHPKVDVPNL EVIKLMQSFK SKEYVRETFS WQHYYWYLTN DGIEHLRSYL NLPSEVVPNT LKKSAKPPSR
101: PFGSGPPGDR PRGPPRFEGD RPRFGDRDGY RGGPRGAPGD FGGEKGGAPA EFQPSFRGSR PGFGRGGGGA FGGGASSME
101: PFGSGPPGDR PRGPPRFEGD RPRFGDRDGY RGGPRGAPGD FGGEKGGAPA EFQPSFRGSR PGFGRGGGGA FGGGASSME
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.