Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400019058 | |
| PGSC0003DMT400019061 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G41520.1 | PGSC0003DMT400019058 | AT2G25000.1 | 21798944 |
| AT5G41520.1 | PGSC0003DMT400019061 | AT2G25000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g099670.2.1 | Tomato | nucleus | 99.45 | 99.45 |
| PGSC0003DMT400075267 | Potato | cytosol | 94.51 | 95.56 |
| VIT_16s0050g01160.t01 | Wine grape | cytosol | 90.11 | 91.11 |
| KRH27894 | Soybean | cytosol | 83.52 | 84.44 |
| KRH77585 | Soybean | nucleus | 83.52 | 83.98 |
| KRH41234 | Soybean | nucleus | 82.42 | 82.87 |
| Os01t0962600-01 | Rice | plastid | 80.77 | 82.12 |
| KRH59964 | Soybean | nucleus | 82.42 | 81.97 |
| GSMUA_Achr11P... | Banana | cytosol | 60.99 | 81.02 |
| Os02t0549600-01 | Rice | cytosol | 81.32 | 80.87 |
| Os04t0430100-01 | Rice | nucleus | 81.32 | 80.87 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 79.12 | 80.45 |
| Zm00001d003672_P001 | Maize | plastid | 79.12 | 79.56 |
| Zm00001d011816_P001 | Maize | plastid | 78.02 | 79.33 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 59.34 | 78.83 |
| EES10818 | Sorghum | cytosol | 79.67 | 78.8 |
| EES04270 | Sorghum | cytosol | 76.92 | 78.21 |
| Zm00001d042023_P001 | Maize | plastid | 75.82 | 77.09 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 79.12 | 76.6 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 79.12 | 76.6 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 79.12 | 76.6 |
| AT5G41520.1 | Thale cress | cytosol | 74.73 | 75.56 |
| Bra025492.1-P | Field mustard | cytosol | 73.63 | 74.86 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 81.32 | 71.15 |
| CDY39734 | Canola | cytosol | 73.08 | 68.21 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 80.22 | 67.28 |
| Zm00001d048305_P001 | Maize | cytosol | 53.3 | 65.99 |
| CDY35037 | Canola | cytosol | 73.08 | 65.2 |
| CDY44470 | Canola | cytosol | 74.18 | 64.29 |
| GSMUA_AchrUn_... | Banana | extracellular | 79.67 | 62.23 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 81.32 | 60.41 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 79.12 | 59.75 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 81.32 | 53.62 |
| CDX67498 | Canola | extracellular | 74.18 | 28.91 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:102604938 | MapMan:17.1.3.1.11 | ProteinID:ABB55398 | ProteinID:ABB55398.1 | EMBL:DQ252521 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | InterPro:IPR036388 |
| RefSeq:NP_001275161.1 | PFAM:PF03501 | EnsemblPlantsGene:PGSC0003DMG400024757 | PGSC:PGSC0003DMG400024757 | EnsemblPlants:PGSC0003DMT400063697 | PANTHER:PTHR12146 |
| PANTHER:PTHR12146:SF7 | UniProt:Q2XTB2 | InterPro:Rps10 | InterPro:S10_plectin_N | UniParc:UPI00005E47A9 | InterPro:WH-like_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
40S ribosomal protein S10 [Source:PGSC_GENE;Acc:PGSC0003DMG400024757]
Coordinates
chr1:-:77394802..77396922
Molecular Weight (calculated)
20128.9 Da
IEP (calculated)
10.147
GRAVY (calculated)
-0.770
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MIISEKNRRE ISKYLFQEGV CYAKKDYNLA KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWYLTN DGIEFLRTYL NLPSEIVPAT LKKSAKPLGR
101: PMGGPPGDRP RGPPRFEGDR PRYGDRDGYR AGPRGPPGEF GGEKGGAPAD YQPAFRGSGG RPGFGRGSGG FGGGAPTSSS FS
101: PMGGPPGDRP RGPPRFEGDR PRYGDRDGYR AGPRGPPGEF GGEKGGAPAD YQPAFRGSGG RPGFGRGSGG FGGGAPTSSS FS
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.