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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d002027_P002
Zm00001d005749_P001
Zm00001d015515_P001
Zm00001d017475_P002
Zm00001d020492_P001
Zm00001d020495_P001
Zm00001d021067_P001
Zm00001d036726_P001
Zm00001d046805_P001
Zm00001d053746_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G25740.1 Zm00001d002027_P002 AT1G22920.1 21798944
AT4G25740.1 Zm00001d017475_P002 AT3G48150.1 21798944
AT5G41520.1 Zm00001d005749_P001 AT2G25000.1 21798944
AT5G41520.1 Zm00001d015515_P001 AT2G25000.1 21798944
AT5G41520.1 Zm00001d020492_P001 AT2G25000.1 21798944
AT5G41520.1 Zm00001d020495_P001 AT2G25000.1 21798944
AT5G41520.1 Zm00001d036726_P001 AT2G25000.1 21798944
AT5G41520.1 Zm00001d046805_P001 AT2G25000.1 21798944
AT5G41520.1 Zm00001d053746_P001 AT2G25000.1 21798944
AT5G41520.1 Zm00001d021067_P001 AT3G08530.1 21798944
AT5G52650.1 Zm00001d021067_P001 AT3G08530.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d011816_P001 Maize plastid 94.97 94.97
EES04270 Sorghum cytosol 94.41 94.41
Os01t0962600-01 Rice plastid 92.18 92.18
Zm00001d025413_P001 Maize extracellular, mitochondrion 82.68 82.68
Zm00001d003672_P001 Maize plastid 82.68 81.77
GSMUA_Achr11P... Banana cytosol 60.89 79.56
VIT_16s0050g01160.t01 Wine grape cytosol 79.89 79.44
GSMUA_Achr2P08200_001 Banana cytosol 59.78 78.1
PGSC0003DMT400075267 Potato cytosol 77.09 76.67
Solyc01g099670.2.1 Tomato nucleus 77.65 76.37
Solyc12g096540.1.1 Tomato nucleus 76.54 76.11
PGSC0003DMT400063697 Potato cytosol 77.09 75.82
AT4G25740.1 Thale cress cytosol 73.18 74.01
KRH41234 Soybean nucleus 74.3 73.48
Bra019143.1-P Field mustard cytosol 73.74 72.93
KRH27894 Soybean cytosol 73.18 72.78
KRH59964 Soybean nucleus 74.3 72.68
HORVU3Hr1G111760.2 Barley mitochondrion 84.36 72.6
KRH77585 Soybean nucleus 73.18 72.38
AT5G52650.1 Thale cress cytosol 72.07 72.07
Bra010448.1-P Field mustard cytosol 72.63 71.82
Bra013915.1-P Field mustard cytosol 72.07 71.67
Bra029112.1-P Field mustard cytosol 70.39 71.19
Bra003118.1-P Field mustard cytosol 69.83 69.83
Zm00001d048305_P001 Maize cytosol 55.87 68.03
Bra025492.1-P Field mustard cytosol 65.36 65.36
VIT_02s0025g00310.t01 Wine grape cytosol 69.27 65.26
CDY27840 Canola cytosol 71.51 64.97
AT5G41520.1 Thale cress cytosol 64.8 64.44
CDY49476 Canola cytosol 72.63 62.8
CDX89397 Canola extracellular 72.07 60.56
GSMUA_AchrUn_... Banana extracellular 78.21 60.09
CDY39734 Canola cytosol 65.36 60.0
GSMUA_Achr8P08040_001 Banana unclear 79.89 59.34
GSMUA_Achr3P22420_001 Banana endoplasmic reticulum, golgi, plasma membrane 80.45 58.78
CDX92731 Canola cytosol 73.74 57.89
CDY56154 Canola endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 70.39 57.8
CDY35037 Canola cytosol 64.8 56.86
CDY44470 Canola cytosol 66.48 56.67
CDX94419 Canola mitochondrion 72.63 54.17
CDY51832 Canola plastid 70.39 53.39
CDY50187 Canola endoplasmic reticulum, golgi 73.18 52.4
GSMUA_Achr1P16990_001 Banana cytosol, endoplasmic reticulum, nucleus 78.77 51.09
CDY66010 Canola cytosol 72.07 50.19
CDX67498 Canola extracellular 65.36 25.05
Protein Annotations
EMBL:JX232264EnsemblPlants:Zm00001d042023_P001EnsemblPlants:Zm00001d042023_T001EnsemblPlantsGene:Zm00001d042023Gene3D:1.10.10.10GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005840InterPro:IPR036388InterPro:Rps10
InterPro:S10_plectin_NInterPro:WH-like_DNA-bd_sfncoils:CoilPANTHER:PTHR12146PANTHER:PTHR12146:SF7PFAM:PF03501
ProteinID:ONM34318.1SEG:segUniParc:UPI000221365EUniProt:J7LC26MapMan:17.1.3.1.11:
Description
Ribosomal protein S10
Coordinates
chr3:+:147720689..147722899
Molecular Weight (calculated)
20061.7 Da
IEP (calculated)
10.305
GRAVY (calculated)
-0.859
Length
179 amino acids
Sequence
(BLAST)
001: MIISKKNRRE ICKYIFHEGV LYAKKDYNLA KHPKLDVPNL EVIKLMQSFK SKEYVRETFS WQYYYWYLTN DGIEHLRSFL NLPSEVVPNT LKKSSKPPSR
101: PFGSGPPGDR PRGPPRFGED RPRFGDRDGY RGGPRGAMGD FGGEKGSAPA DFQPSFRGSR PGFGRGGGSA FGASGSSME
Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.