Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042023_P001 | Maize | plastid | 94.41 | 94.41 |
| Os01t0962600-01 | Rice | plastid | 93.3 | 93.3 |
| EES10818 | Sorghum | cytosol | 84.92 | 82.61 |
| GSMUA_Achr11P... | Banana | cytosol | 63.13 | 82.48 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 62.01 | 81.02 |
| VIT_16s0050g01160.t01 | Wine grape | cytosol | 79.89 | 79.44 |
| Solyc01g099670.2.1 | Tomato | nucleus | 78.77 | 77.47 |
| PGSC0003DMT400075267 | Potato | cytosol | 77.65 | 77.22 |
| PGSC0003DMT400063697 | Potato | cytosol | 78.21 | 76.92 |
| Solyc12g096540.1.1 | Tomato | nucleus | 77.09 | 76.67 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 86.03 | 74.04 |
| AT4G25740.1 | Thale cress | cytosol | 73.18 | 74.01 |
| Bra010448.1-P | Field mustard | cytosol | 73.74 | 72.93 |
| KRH41234 | Soybean | nucleus | 73.74 | 72.93 |
| Bra019143.1-P | Field mustard | cytosol | 73.74 | 72.93 |
| KRH27894 | Soybean | cytosol | 73.18 | 72.78 |
| KRH77585 | Soybean | nucleus | 73.18 | 72.38 |
| KRH59964 | Soybean | nucleus | 73.74 | 72.13 |
| AT5G52650.1 | Thale cress | cytosol | 72.07 | 72.07 |
| Bra029112.1-P | Field mustard | cytosol | 70.95 | 71.75 |
| Bra013915.1-P | Field mustard | cytosol | 71.51 | 71.11 |
| Bra003118.1-P | Field mustard | cytosol | 70.39 | 70.39 |
| Bra025492.1-P | Field mustard | cytosol | 65.92 | 65.92 |
| AT5G41520.1 | Thale cress | cytosol | 65.92 | 65.56 |
| VIT_02s0025g00310.t01 | Wine grape | cytosol | 69.27 | 65.26 |
| CDY27840 | Canola | cytosol | 71.51 | 64.97 |
| CDY49476 | Canola | cytosol | 73.18 | 63.28 |
| GSMUA_AchrUn_... | Banana | extracellular | 80.45 | 61.8 |
| CDY39734 | Canola | cytosol | 67.04 | 61.54 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 82.68 | 61.41 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 83.24 | 60.82 |
| CDX89397 | Canola | extracellular | 72.07 | 60.56 |
| CDY56154 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 70.95 | 58.26 |
| CDY44470 | Canola | cytosol | 68.16 | 58.1 |
| CDX92731 | Canola | cytosol | 73.74 | 57.89 |
| CDY35037 | Canola | cytosol | 65.36 | 57.35 |
| CDX94419 | Canola | mitochondrion | 73.18 | 54.58 |
| CDY51832 | Canola | plastid | 70.95 | 53.81 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 81.56 | 52.9 |
| CDY50187 | Canola | endoplasmic reticulum, golgi | 73.18 | 52.4 |
| CDY66010 | Canola | cytosol | 73.18 | 50.97 |
| CDX67498 | Canola | extracellular | 65.92 | 25.27 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.1.3.1.11 | EntrezGene:8074109 | UniProt:C5XIN8 | EnsemblPlants:EES04270 | ProteinID:EES04270 |
| ProteinID:EES04270.1 | GO:GO:0000028 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0022627 |
| InterPro:IPR036388 | PFAM:PF03501 | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | InterPro:Rps10 | InterPro:S10_plectin_N |
| EnsemblPlantsGene:SORBI_3003G436700 | unigene:Sbi.15238 | UniParc:UPI0001A85811 | InterPro:WH-like_DNA-bd_sf | RefSeq:XP_002459150.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr3:-:73745924..73748245
Molecular Weight (calculated)
20009.7 Da
IEP (calculated)
10.305
GRAVY (calculated)
-0.877
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MIISKKNRRE ICKYLFHEGV LYAKKDYNLA KHPKLDVPNL EVIKLMQSFK SKEYVRETFS WQYYYWYLTN DGIEHLRTFL NLPSEVVPNT LKKSSKPPSR
101: PFGSGPPGDR PRGPPRFGED RPRFGDRDGY RGAPRGAPGD FGGEKGGAPS EFQPTFRGSR PGFGRGGGGA FGAGGSSME
101: PFGSGPPGDR PRGPPRFGED RPRFGDRDGY RGAPRGAPGD FGGEKGGAPS EFQPTFRGSR PGFGRGGGGA FGAGGSSME
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.