CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
endoplasmic reticulum 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25761
CDY36901
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25740.1	CDY04768	AT1G22920.1	21798944
AT4G25740.1	CDY21400	AT1G22920.1	21798944
AT4G25740.1	CDY25761	AT1G22920.1	21798944
AT4G25740.1	CDY36901	AT3G48150.1	21798944
AT4G25740.1	CDY44976	AT3G48150.1	21798944
AT4G25740.1	CDY58069	AT3G48150.1	21798944
AT4G25740.1	CDY58070	AT3G48150.1	21798944
AT4G25740.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010448.1-P	Field mustard	cytosol	70.04	99.45
AT4G25740.1	Thale cress	cytosol	63.81	92.66
CDY49476	Canola	cytosol	70.04	86.96
CDY27840	Canola	cytosol	64.98	84.77
CDX89397	Canola	extracellular	67.7	81.69
CDY56154	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	65.37	77.06
CDX92731	Canola	cytosol	68.09	76.75
GSMUA_Achr11P...	Banana	cytosol	40.08	75.18
Os04t0430100-01	Rice	nucleus	53.31	74.86
Os02t0549600-01	Rice	cytosol	53.31	74.86
Os01t0962600-01	Rice	plastid	52.14	74.86
Zm00001d025413_P001	Maize	extracellular, mitochondrion	51.75	74.3
CDX94419	Canola	mitochondrion	68.87	73.75
EES10818	Sorghum	cytosol	52.53	73.37
EES04270	Sorghum	cytosol	50.97	73.18
Zm00001d011816_P001	Maize	plastid	50.97	73.18
CDY39734	Canola	cytosol	55.25	72.82
CDY51832	Canola	plastid	66.54	72.46
Zm00001d003672_P001	Maize	plastid	50.97	72.38
GSMUA_Achr2P08200_001	Banana	cytosol	38.52	72.26
Zm00001d042023_P001	Maize	plastid	50.19	72.07
TraesCS2A01G302600.1	Wheat	cytosol	51.75	70.74
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	51.75	70.74
TraesCS2D01G301300.1	Wheat	cytosol	51.75	70.74
CDY50187	Canola	endoplasmic reticulum, golgi	67.32	69.2
CDY35037	Canola	cytosol	54.47	68.63
CDY44470	Canola	cytosol	54.86	67.14
HORVU3Hr1G111760.2	Barley	mitochondrion	52.53	64.9
HORVU0Hr1G004700.1	Barley	mitochondrion	52.14	61.75
Zm00001d048305_P001	Maize	cytosol	35.02	61.22
GSMUA_AchrUn_...	Banana	extracellular	52.14	57.51
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	54.47	57.14
GSMUA_Achr8P08040_001	Banana	unclear	52.53	56.02
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	55.25	51.45
CDX67498	Canola	extracellular	56.42	31.05

Protein Annotations

EnsemblPlants:CDY66010	EnsemblPlantsGene:GSBRNA2T00051168001	Gene3D:1.10.10.10	InterPro:IPR036388	InterPro:Rps10	InterPro:S10_plectin_N
InterPro:WH-like_DNA-bd_sf	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	PFAM:PF03501	ProteinID:CDY66010	ProteinID:CDY66010.1
SEG:seg	UniParc:UPI0004EF0B82	UniProt:A0A078JHM6	MapMan:17.1.3.1.11	:	:

Description

BnaA08g30820DBnaA08g30820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHM6]

Coordinates

chrLK035043:-:12310..14331

Molecular Weight (calculated)

28436.3 Da

IEP (calculated)

9.963

GRAVY (calculated)

-0.426

Length

257 amino acids

Sequence
(BLAST)

001: MDLIDVLGTY TYAVSGLLRN LRMLLCFLRC QTKQKQKQLC VSLQRKLNQQ DNGIDSAYVL HVVVKVLIRL CCSSSCQIIT ETNRREICKY LFKEGVLFAK
101: KDFNLPKHPL IESVPNLQVI KLMQSFKSKE YVRETFAWMH YYWFLTNEGI EFLRTYLNLP SDVVPATLKK SAKPGGRPFG GPSGDRPRGP PRFDGDRPRY
201: GDRDGYRGAP RGGDAGGEKG GAPADYQPSF QGSGGRPGFG RGAGGYSAAA PSGSGLP

Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)

001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP

Arabidopsis Description

RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.