Factsheet for Zm00001d048305_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d005749_P001
Zm00001d015515_P001
Zm00001d017475_P002
Zm00001d020492_P001
Zm00001d020495_P001
Zm00001d021067_P001
Zm00001d036726_P001
Zm00001d046805_P001
Zm00001d053746_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25740.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT4G25740.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT5G41520.1	Zm00001d005749_P001	AT2G25000.1	21798944
AT5G41520.1	Zm00001d015515_P001	AT2G25000.1	21798944
AT5G41520.1	Zm00001d020492_P001	AT2G25000.1	21798944
AT5G41520.1	Zm00001d020495_P001	AT2G25000.1	21798944
AT5G41520.1	Zm00001d036726_P001	AT2G25000.1	21798944
AT5G41520.1	Zm00001d046805_P001	AT2G25000.1	21798944
AT5G41520.1	Zm00001d053746_P001	AT2G25000.1	21798944
AT5G41520.1	Zm00001d021067_P001	AT3G08530.1	21798944
AT5G52650.1	Zm00001d021067_P001	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025413_P001	Maize	extracellular, mitochondrion	76.19	62.57
Os02t0549600-01	Rice	cytosol	76.19	61.2
Os04t0430100-01	Rice	nucleus	76.19	61.2
EES10818	Sorghum	cytosol	76.19	60.87
Zm00001d003672_P001	Maize	plastid	74.83	60.77
TraesCS2A01G302600.1	Wheat	cytosol	72.11	56.38
TraesCS2D01G301300.1	Wheat	cytosol	72.11	56.38
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	72.11	56.38
Zm00001d042023_P001	Maize	plastid	68.03	55.87
Zm00001d011816_P001	Maize	plastid	68.03	55.87
VIT_16s0050g01160.t01	Wine grape	cytosol	66.67	54.44
PGSC0003DMT400075267	Potato	cytosol	65.99	53.89
Solyc12g096540.1.1	Tomato	nucleus	65.99	53.89
Solyc01g099670.2.1	Tomato	nucleus	66.67	53.85
PGSC0003DMT400063697	Potato	cytosol	65.99	53.3
AT4G25740.1	Thale cress	cytosol	63.27	52.54
Bra013915.1-P	Field mustard	cytosol	63.95	52.22
KRH27894	Soybean	cytosol	63.95	52.22
Bra029112.1-P	Field mustard	cytosol	62.59	51.98
AT5G52650.1	Thale cress	cytosol	63.27	51.96
KRH77585	Soybean	nucleus	63.95	51.93
KRH41234	Soybean	nucleus	63.95	51.93
KRH59964	Soybean	nucleus	63.95	51.37
Bra019143.1-P	Field mustard	cytosol	62.59	50.83
Bra010448.1-P	Field mustard	cytosol	61.9	50.28
Bra003118.1-P	Field mustard	cytosol	60.54	49.72
HORVU0Hr1G004700.1	Barley	mitochondrion	72.11	48.85
VIT_02s0025g00310.t01	Wine grape	cytosol	62.59	48.42
AT5G41520.1	Thale cress	cytosol	57.82	47.22
CDY27840	Canola	cytosol	61.22	45.69
Bra025492.1-P	Field mustard	cytosol	54.42	44.69
GSMUA_Achr2P08200_001	Banana	cytosol	41.5	44.53
GSMUA_Achr11P...	Banana	cytosol	41.5	44.53
CDY49476	Canola	cytosol	61.9	43.96
CDX89397	Canola	extracellular	63.27	43.66
CDY56154	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	62.59	42.2
GSMUA_AchrUn_...	Banana	extracellular	66.67	42.06
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	68.71	41.22
GSMUA_Achr8P08040_001	Banana	unclear	67.35	41.08
CDY39734	Canola	cytosol	53.74	40.51
CDX92731	Canola	cytosol	62.59	40.35
CDY51832	Canola	plastid	62.59	38.98
CDX94419	Canola	mitochondrion	63.27	38.75
CDY35037	Canola	cytosol	53.06	38.24
CDY44470	Canola	cytosol	54.42	38.1
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	68.71	36.59
CDY50187	Canola	endoplasmic reticulum, golgi	61.9	36.4
CDY66010	Canola	cytosol	61.22	35.02
CDX67498	Canola	extracellular	53.74	16.92

Protein Annotations

EnsemblPlants:Zm00001d048305_P001	EnsemblPlants:Zm00001d048305_T001	EnsemblPlantsGene:Zm00001d048305	Gene3D:1.10.10.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	InterPro:IPR036388	InterPro:Rps10	InterPro:S10_plectin_N
InterPro:WH-like_DNA-bd_sf	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	PFAM:PF03501	ProteinID:AQL09343.1	SEG:seg
UniParc:UPI0008442E99	UniProt:A0A1D6PJ49	MapMan:17.1.3.1.11	:	:	:

Description

40S ribosomal protein S10-1

Coordinates

chr9:+:154241747..154243831

Molecular Weight (calculated)

17637.3 Da

IEP (calculated)

10.240

GRAVY (calculated)

-0.712

Length

147 amino acids

Sequence
(BLAST)

001: MIILKKNSNE ICKYLFKEGV LYAKKDYNLA KHPQIDVPNL QVIKLMQSFK SKEYVRETFS WQYYYWYLTN DGIEHLRNYL NLRSEIVPAT LKKSAKPPGR
101: PFGSGPPGNR PRYHWLFFRH NMYQLRQERD IKHETFAILS LGRSYSQ

Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)

001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP

Arabidopsis Description

RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.