Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER98905 | Sorghum | nucleus, plastid | 84.11 | 77.68 |
| Os09t0417600-02 | Rice | nucleus | 66.56 | 61.47 |
| Zm00001d005749_P001 | Maize | nucleus | 70.86 | 60.97 |
| TraesCS5B01G224100.1 | Wheat | nucleus | 62.58 | 57.27 |
| TraesCS5A01G225600.1 | Wheat | nucleus | 61.26 | 55.89 |
| TraesCS5D01G232800.1 | Wheat | nucleus | 60.93 | 55.59 |
| TraesCS5B01G224000.1 | Wheat | nucleus | 59.93 | 54.68 |
| TraesCS5D01G232900.1 | Wheat | nucleus | 62.25 | 50.67 |
| HORVU5Hr1G065420.15 | Barley | nucleus | 59.6 | 46.04 |
| Bra019123.1-P | Field mustard | nucleus | 28.15 | 43.81 |
| Solyc12g042590.1.1 | Tomato | nucleus | 29.47 | 41.2 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 42.38 | 41.16 |
| PGSC0003DMT400073710 | Potato | nucleus | 29.47 | 41.01 |
| Zm00001d020495_P001 | Maize | nucleus | 36.09 | 40.98 |
| GSMUA_Achr4P01930_001 | Banana | extracellular, golgi | 38.08 | 39.79 |
| Bra008435.1-P | Field mustard | nucleus | 37.42 | 38.97 |
| CDY22299 | Canola | nucleus | 37.42 | 38.97 |
| CDY67287 | Canola | nucleus | 37.09 | 38.62 |
| Bra003588.1-P | Field mustard | nucleus | 37.09 | 37.71 |
| CDX67971 | Canola | nucleus | 37.09 | 37.71 |
| CDX88573 | Canola | nucleus | 37.42 | 37.54 |
| AT1G80840.1 | Thale cress | nucleus | 37.42 | 37.42 |
| CDX87347 | Canola | nucleus | 37.09 | 37.33 |
| Bra035148.1-P | Field mustard | nucleus | 37.09 | 37.33 |
| KRH23643 | Soybean | nucleus | 38.08 | 37.22 |
| CDX79347 | Canola | nucleus | 36.42 | 36.91 |
| KRH61669 | Soybean | nucleus | 26.82 | 36.82 |
| KRH44560 | Soybean | nucleus | 38.08 | 36.74 |
| Solyc08g067340.2.1 | Tomato | nucleus | 30.46 | 36.36 |
| KRH47344 | Soybean | nucleus | 37.42 | 36.33 |
| PGSC0003DMT400019061 | Potato | nucleus | 29.47 | 35.18 |
| CDX72327 | Canola | nucleus | 33.11 | 35.09 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 36.76 | 35.02 |
| KRH09652 | Soybean | nucleus | 38.08 | 34.85 |
| CDX75196 | Canola | nucleus | 32.45 | 34.63 |
| PGSC0003DMT400019058 | Potato | nucleus | 29.8 | 34.48 |
| KRH15674 | Soybean | nucleus | 32.12 | 34.4 |
| AT2G25000.1 | Thale cress | nucleus | 30.79 | 34.32 |
| Solyc08g067360.2.1 | Tomato | nucleus | 28.81 | 33.72 |
| Solyc06g068460.2.1 | Tomato | nucleus | 39.74 | 33.33 |
| PGSC0003DMT400073396 | Potato | nucleus | 39.4 | 33.06 |
| Zm00001d053746_P001 | Maize | nucleus | 35.1 | 33.02 |
| AT4G31800.1 | Thale cress | nucleus | 33.77 | 32.9 |
| Zm00001d036726_P001 | Maize | nucleus | 37.42 | 32.85 |
| Zm00001d046805_P001 | Maize | nucleus | 36.76 | 31.62 |
| Bra010220.1-P | Field mustard | nucleus | 32.12 | 31.49 |
| Zm00001d015515_P001 | Maize | nucleus | 36.09 | 31.41 |
| CDY39879 | Canola | nucleus | 31.79 | 31.27 |
| Bra011299.1-P | Field mustard | nucleus | 32.78 | 31.23 |
| CDX68787 | Canola | nucleus | 32.78 | 31.03 |
| PGSC0003DMT400051047 | Potato | nucleus | 36.42 | 30.99 |
| Solyc03g116890.2.1 | Tomato | nucleus | 35.43 | 30.57 |
| KRH05350 | Soybean | nucleus | 31.46 | 30.45 |
| KRH52329 | Soybean | nucleus | 30.79 | 30.1 |
| Bra023983.1-P | Field mustard | nucleus | 32.78 | 28.7 |
| CDY70096 | Canola | nucleus | 32.78 | 28.7 |
| Zm00001d011237_P001 | Maize | nucleus | 17.88 | 18.12 |
| Zm00001d045375_P001 | Maize | nucleus | 14.24 | 17.2 |
| Zm00001d008190_P001 | Maize | nucleus | 27.15 | 16.17 |
| Zm00001d008794_P001 | Maize | nucleus | 27.48 | 15.37 |
| Zm00001d040554_P001 | Maize | nucleus | 29.14 | 15.15 |
| Zm00001d039532_P001 | Maize | nucleus | 26.82 | 14.81 |
| Zm00001d024768_P001 | Maize | nucleus | 26.16 | 14.44 |
| Zm00001d039245_P001 | Maize | nucleus | 24.83 | 13.86 |
| Zm00001d018203_P001 | Maize | nucleus | 24.17 | 12.61 |
| Zm00001d009595_P001 | Maize | nucleus | 24.83 | 12.3 |
| Zm00001d039044_P001 | Maize | nucleus | 25.5 | 12.26 |
Protein Annotations
| EntrezGene:100147737 | MapMan:15.5.22 | Gene3D:2.20.25.80 | UniProt:B1Q040 | EMBL:BT035304 | ncoils:Coil |
| EMBL:EU518772 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:IPR003657 | InterPro:IPR036576 | EMBL:KJ726810 | ProteinID:ONM55008.1 | PFAM:PF03106 | PFscan:PS50811 |
| PANTHER:PTHR31429 | PANTHER:PTHR31429:SF3 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI000171FFC2 | InterPro:WRKY_dom |
| InterPro:WRKY_dom_sf | EnsemblPlantsGene:Zm00001d020492 | EnsemblPlants:Zm00001d020492_P001 | EnsemblPlants:Zm00001d020492_T001 | SEG:seg | : |
Description
WRKY-transcription factor 53Probable WRKY transcription factor 40
Coordinates
chr7:-:118720426..118722244
Molecular Weight (calculated)
32498.2 Da
IEP (calculated)
7.654
GRAVY (calculated)
-0.562
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLLMDSGSR GDCSPVCLDL SVGLSPPSPG SGPETTADAE RLDRPATGCW GPRTSSLADG KDEAKTLEAR LTQVSEENRR LTEIIAYMYA SQVAARRSPD
101: GRKRSRDSLE PSNSGDANAA VESAALSDEG TCRRIKLTRV CTKIDPSDTT LTVKDGYQWR KYGQKVTRDN PSPRAYFRCA YAPSCPVKKK VQRSAEDSAM
201: LVATYEGEHN HPSPTRAGEL PSSTSINSSG PAITLDLTRN GAGAVRGLDA AAEVPGLKRL CQEIASPDFR TALVEQMARS LTKDPKFTDA LAAAILQQLP
301: EY
101: GRKRSRDSLE PSNSGDANAA VESAALSDEG TCRRIKLTRV CTKIDPSDTT LTVKDGYQWR KYGQKVTRDN PSPRAYFRCA YAPSCPVKKK VQRSAEDSAM
201: LVATYEGEHN HPSPTRAGEL PSSTSINSSG PAITLDLTRN GAGAVRGLDA AAEVPGLKRL CQEIASPDFR TALVEQMARS LTKDPKFTDA LAAAILQQLP
301: EY
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.