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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002421.1-P
Bra003588.1-P
Bra008435.1-P
Bra010220.1-P
Bra011299.1-P
Bra019123.1-P
Bra020196.1-P
Bra020197.1-P
Bra023983.1-P
Bra035148.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G80840.1 Bra003588.1-P AT1G80840.1 16603654
AT1G80840.1 Bra008435.1-P AT1G80840.1 16603654
AT1G80840.1 Bra035148.1-P AT1G80840.1 16603654
AT1G80840.1 Bra010220.1-P AT2G25000.1 16603654
AT1G80840.1 Bra011299.1-P AT4G31800.1 16603654
AT1G80840.1 Bra019123.1-P AT4G31800.1 16603654
AT1G80840.1 Bra023983.1-P AT4G31800.1 16603654
AT1G80840.1 Bra011299.1-P AT4G31800.1 18776063
AT1G80840.1 Bra019123.1-P AT4G31800.1 18776063
AT1G80840.1 Bra023983.1-P AT4G31800.1 18776063
AT1G80840.1 Bra011299.1-P AT4G31800.1 21798944
AT1G80840.1 Bra019123.1-P AT4G31800.1 21798944
AT1G80840.1 Bra023983.1-P AT4G31800.1 21798944
AT1G80840.1 Bra002421.1-P AT5G22570.1 21798944
AT1G80840.1 Bra020196.1-P AT5G22570.1 21798944
AT1G80840.1 Bra020197.1-P AT5G22570.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY22299 Canola nucleus 99.66 99.66
CDY67287 Canola nucleus 99.31 99.31
Bra003588.1-P Field mustard nucleus 88.28 86.2
AT1G80840.1 Thale cress nucleus 89.31 85.76
Bra035148.1-P Field mustard nucleus 87.93 85.0
GSMUA_Achr7P19340_001 Banana nucleus 36.55 55.21
KRH23643 Soybean nucleus 57.59 54.05
VIT_09s0018g00240.t01 Wine grape nucleus 56.55 52.73
KRH47344 Soybean nucleus 56.21 52.41
KRH44560 Soybean nucleus 56.21 52.08
KRH09652 Soybean nucleus 56.55 49.7
Bra019123.1-P Field mustard nucleus 32.76 48.97
GSMUA_Achr2P05100_001 Banana nucleus 31.72 48.42
GSMUA_Achr11P... Banana nucleus 39.31 46.53
Solyc03g116890.2.1 Tomato nucleus 55.52 46.0
GSMUA_Achr5P16460_001 Banana nucleus 37.24 45.96
PGSC0003DMT400051047 Potato nucleus 55.17 45.07
GSMUA_Achr10P... Banana nucleus 35.86 44.83
Solyc06g068460.2.1 Tomato nucleus 52.41 42.22
HORVU5Hr1G065380.2 Barley nucleus 25.17 41.95
PGSC0003DMT400073396 Potato nucleus 52.07 41.94
GSMUA_Achr3P13440_001 Banana nucleus 39.66 41.82
GSMUA_Achr7P05200_001 Banana nucleus 39.66 41.07
Bra010220.1-P Field mustard nucleus 43.1 40.58
GSMUA_Achr7P16090_001 Banana endoplasmic reticulum, nucleus, plastid 30.34 39.46
GSMUA_Achr10P... Banana nucleus 38.97 39.24
GSMUA_Achr4P01930_001 Banana extracellular, golgi 38.97 39.1
Bra011299.1-P Field mustard nucleus 42.41 38.8
Zm00001d020492_P001 Maize nucleus 38.97 37.42
GSMUA_Achr1P10080_001 Banana nucleus 43.1 37.31
TraesCS7D01G497400.1 Wheat nucleus 41.72 37.0
TraesCS7B01G418500.2 Wheat nucleus 41.38 36.47
Os09t0417600-02 Rice nucleus 41.03 36.39
TraesCS7B01G419400.1 Wheat nucleus 40.34 36.34
Os02t0181300-01 Rice nucleus 43.45 36.21
TraesCS7B01G418400.1 Wheat nucleus 40.69 36.2
TraesCS7A01G508800.1 Wheat nucleus 40.69 36.09
TraesCS7D01G497800.1 Wheat nucleus 40.34 35.89
Zm00001d053746_P001 Maize nucleus 39.66 35.83
TraesCS7A01G508700.1 Wheat nucleus 39.66 35.49
HORVU7Hr1G113830.1 Barley nucleus 38.97 35.42
Bra023983.1-P Field mustard nucleus 42.07 35.36
Os06t0649000-01 Rice nucleus 41.03 35.31
TraesCS5D01G232800.1 Wheat nucleus 40.0 35.05
TraesCS7D01G497700.1 Wheat nucleus 38.97 34.45
TraesCS7B01G418600.1 Wheat nucleus 34.14 34.26
EER98905 Sorghum nucleus, plastid 38.62 34.25
TraesCS5B01G224100.1 Wheat nucleus 38.97 34.24
EER90124 Sorghum nucleus 40.34 34.21
TraesCS5B01G224000.1 Wheat nucleus 38.97 34.14
Zm00001d036726_P001 Maize nucleus 40.34 34.01
EES04642 Sorghum nucleus 42.41 33.79
Zm00001d015515_P001 Maize nucleus 40.34 33.72
TraesCS5A01G225600.1 Wheat nucleus 38.28 33.53
TraesCS7A01G509000.1 Wheat nucleus 40.0 33.33
TraesCS5D01G232700.1 Wheat nucleus 31.03 33.21
EER88729 Sorghum nucleus 39.66 33.05
TraesCS6A01G146900.1 Wheat nucleus 39.31 32.57
Zm00001d046805_P001 Maize nucleus 39.31 32.48
TraesCS6D01G136200.1 Wheat nucleus 38.97 32.47
Zm00001d020495_P001 Maize nucleus 29.66 32.33
TraesCS5A01G225500.1 Wheat nucleus 30.0 32.1
HORVU6Hr1G028790.1 Barley nucleus 38.62 31.73
TraesCS6B01G175100.2 Wheat nucleus 38.62 31.55
TraesCS7D01G497300.1 Wheat plastid 40.34 31.45
Zm00001d005749_P001 Maize nucleus 36.9 30.48
TraesCS5D01G232900.1 Wheat nucleus 38.62 30.19
KXG35639 Sorghum nucleus 30.69 30.17
HORVU7Hr1G113850.4 Barley nucleus, plastid 40.34 28.82
HORVU5Hr1G065420.15 Barley nucleus 38.62 28.64
Os09t0417800-01 Rice nucleus 31.03 28.3
Bra025693.1-P Field mustard nucleus 18.62 18.82
Bra029491.1-P Field mustard nucleus 31.38 18.5
Bra007884.1-P Field mustard nucleus 23.79 18.02
Bra000793.1-P Field mustard nucleus 31.72 17.73
Bra013584.1-P Field mustard nucleus 32.41 17.47
Bra004285.1-P Field mustard nucleus 18.97 16.77
Bra027057.1-P Field mustard nucleus 31.72 16.67
Bra036315.1-P Field mustard nucleus 27.93 16.53
Bra031053.1-P Field mustard nucleus 25.86 15.96
Bra016535.1-P Field mustard nucleus 25.52 15.61
Bra023505.1-P Field mustard nucleus 27.24 15.31
Bra006283.1-P Field mustard nucleus 27.24 14.99
Bra034482.1-P Field mustard nucleus 26.21 14.99
Bra008719.1-P Field mustard nucleus 27.59 14.52
Bra040505.1-P Field mustard nucleus 25.52 13.83
Bra016263.1-P Field mustard nucleus 22.07 8.56
Bra025692.1-P Field mustard nucleus 6.55 7.88
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80EnsemblPlantsGene:Bra008435EnsemblPlants:Bra008435.1EnsemblPlants:Bra008435.1-PGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0043565InterPro:IPR003657InterPro:IPR036576
UniProt:M4CW38PFAM:PF03106PFscan:PS50811PANTHER:PTHR31429PANTHER:PTHR31429:SF3SMART:SM00774
SUPFAM:SSF118290UniParc:UPI0002546A65InterPro:WRKY_domInterPro:WRKY_dom_sfSEG:seg:
Description
AT1G80840 (E=1e-102) WRKY40, ATWRKY40 | WRKY40; transcription factor
Coordinates
chrA02:-:15607697..15609784
Molecular Weight (calculated)
32428.1 Da
IEP (calculated)
7.823
GRAVY (calculated)
-0.780
Length
290 amino acids
Sequence
(BLAST)
001: MDQYPSSLVD TSLDLTIGVT RMRVEEDSTT TALVDELNRM NAENKKLSEM LTLMCDKYNV LREQLMEYVN KTERDQVSPP KKRKSPARDD ANSSAVVGGV
101: SESSSTDQDD QYLCKKQREE TVVKEKVSRV YYKTEASDTT LVVKDGYQWR KYGQKVTRDN PSPRAYFKCA CAPSCSVKKK VQRSVEDQSV LVATYEGEHN
201: HPMPSQIDSN SGLNRSPGAA NRSRSLAEPV TTIDLTETKK VTSPSRVDFP EVQKLLVEQM ASSLTKDPNF TAALAAAVTG KLYQQNQTDK
Best Arabidopsis Sequence Match ( AT1G80840.1 )
(BLAST)
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.