Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G508800.1 | Wheat | nucleus | 96.64 | 96.64 |
| TraesCS7B01G418500.2 | Wheat | nucleus | 92.05 | 91.49 |
| TraesCS7D01G497800.1 | Wheat | nucleus | 83.49 | 83.74 |
| TraesCS7D01G497700.1 | Wheat | nucleus | 82.26 | 82.01 |
| TraesCS7D01G497300.1 | Wheat | plastid | 80.12 | 70.43 |
| HORVU7Hr1G113850.4 | Barley | nucleus, plastid | 86.54 | 69.7 |
| Os06t0649000-01 | Rice | nucleus | 63.91 | 62.02 |
| Zm00001d036726_P001 | Maize | nucleus | 63.0 | 59.88 |
| EER90124 | Sorghum | nucleus | 61.16 | 58.48 |
| Zm00001d046805_P001 | Maize | nucleus | 61.77 | 57.55 |
| EER88729 | Sorghum | nucleus | 61.16 | 57.47 |
| TraesCS6D01G136200.1 | Wheat | nucleus | 58.41 | 54.89 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 41.28 | 48.21 |
| Bra019123.1-P | Field mustard | nucleus | 26.61 | 44.85 |
| Solyc12g042590.1.1 | Tomato | nucleus | 27.83 | 42.13 |
| PGSC0003DMT400073710 | Potato | nucleus | 27.83 | 41.94 |
| Solyc08g067340.2.1 | Tomato | nucleus | 32.42 | 41.9 |
| CDY22299 | Canola | nucleus | 37.0 | 41.72 |
| Bra008435.1-P | Field mustard | nucleus | 37.0 | 41.72 |
| CDY67287 | Canola | nucleus | 36.7 | 41.38 |
| KRH61669 | Soybean | nucleus | 27.83 | 41.36 |
| KRH47344 | Soybean | nucleus | 39.14 | 41.16 |
| PGSC0003DMT400019061 | Potato | nucleus | 31.8 | 41.11 |
| KRH23643 | Soybean | nucleus | 38.84 | 41.1 |
| PGSC0003DMT400019058 | Potato | nucleus | 32.72 | 41.0 |
| Bra003588.1-P | Field mustard | nucleus | 37.0 | 40.74 |
| CDX67971 | Canola | nucleus | 37.0 | 40.74 |
| Bra035148.1-P | Field mustard | nucleus | 37.31 | 40.67 |
| CDX87347 | Canola | nucleus | 37.31 | 40.67 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 38.53 | 40.51 |
| KRH15674 | Soybean | nucleus | 34.86 | 40.43 |
| AT1G80840.1 | Thale cress | nucleus | 37.31 | 40.4 |
| Solyc08g067360.2.1 | Tomato | nucleus | 31.8 | 40.31 |
| CDX88573 | Canola | nucleus | 37.0 | 40.2 |
| KRH44560 | Soybean | nucleus | 37.92 | 39.62 |
| CDX79347 | Canola | nucleus | 36.09 | 39.6 |
| CDX72327 | Canola | nucleus | 33.95 | 38.95 |
| CDX75196 | Canola | nucleus | 33.33 | 38.52 |
| TraesCS5D01G232700.1 | Wheat | nucleus | 31.8 | 38.38 |
| AT2G25000.1 | Thale cress | nucleus | 31.5 | 38.01 |
| KRH09652 | Soybean | nucleus | 38.23 | 37.88 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 36.39 | 37.54 |
| Bra010220.1-P | Field mustard | nucleus | 34.56 | 36.69 |
| CDY39879 | Canola | nucleus | 34.25 | 36.48 |
| CDX68787 | Canola | nucleus | 35.47 | 36.36 |
| Bra011299.1-P | Field mustard | nucleus | 34.86 | 35.96 |
| AT4G31800.1 | Thale cress | nucleus | 33.64 | 35.48 |
| KRH05350 | Soybean | nucleus | 33.64 | 35.26 |
| TraesCS5D01G232800.1 | Wheat | nucleus | 35.47 | 35.05 |
| KRH52329 | Soybean | nucleus | 31.19 | 33.01 |
| Solyc06g068460.2.1 | Tomato | nucleus | 36.09 | 32.78 |
| PGSC0003DMT400073396 | Potato | nucleus | 36.09 | 32.78 |
| Solyc03g116890.2.1 | Tomato | nucleus | 34.86 | 32.57 |
| PGSC0003DMT400051047 | Potato | nucleus | 34.56 | 31.83 |
| CDY70096 | Canola | nucleus | 33.33 | 31.59 |
| Bra023983.1-P | Field mustard | nucleus | 33.33 | 31.59 |
| TraesCS5D01G232900.1 | Wheat | nucleus | 34.25 | 30.19 |
| TraesCS3D01G113300.1 | Wheat | nucleus | 23.55 | 15.65 |
| TraesCS1D01G412500.1 | Wheat | nucleus | 25.99 | 14.38 |
| TraesCS7D01G092600.1 | Wheat | nucleus | 24.16 | 13.06 |
| TraesCS3D01G173300.2 | Wheat | plastid | 25.38 | 13.05 |
| TraesCS6D01G306300.1 | Wheat | nucleus | 22.02 | 12.88 |
| TraesCS7D01G092500.2 | Wheat | nucleus | 22.94 | 12.69 |
| TraesCS7D01G092400.1 | Wheat | nucleus | 21.71 | 11.74 |
| TraesCS7D01G092300.1 | Wheat | nucleus | 21.71 | 11.74 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 |
| PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF33 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS7D01G497400 |
| EnsemblPlants:TraesCS7D01G497400.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7D:+:603982571..603983665
Molecular Weight (calculated)
35151.4 Da
IEP (calculated)
9.240
GRAVY (calculated)
-0.628
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEQWMMGQT SLSLGLNVGR PTAPRGAPPV TKVLVEEDFM SSKKNHEVEA LEAELRRVGE ENRRLSDMLR ALVAKYCDLQ GRVSGMMAAA VAANNHQSPT
101: TSEGGSAASP SRKRARSDSP DTAVQEARPA SGGFAVSVNV GPDQAECTSV HEPCNSKRVR ADECKASRVS KLYVHADPSD LSLVVKDGYQ WRKYGQKVTK
201: DNPCPRAYFR CSFAPSCQVK KKVQRSAEDR TVLVATYEGE HNHAQPPKMQ GSGGRKSADA AAVRASPAPP LAQQQPKQQS MTEAGSAADR KNLAEQMAAT
301: LTRDPGFKAA LVSALSGRIL ELSPSDS
101: TSEGGSAASP SRKRARSDSP DTAVQEARPA SGGFAVSVNV GPDQAECTSV HEPCNSKRVR ADECKASRVS KLYVHADPSD LSLVVKDGYQ WRKYGQKVTK
201: DNPCPRAYFR CSFAPSCQVK KKVQRSAEDR TVLVATYEGE HNHAQPPKMQ GSGGRKSADA AAVRASPAPP LAQQQPKQQS MTEAGSAADR KNLAEQMAAT
301: LTRDPGFKAA LVSALSGRIL ELSPSDS
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.