Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G508800.1 | Wheat | nucleus | 91.79 | 92.35 |
| TraesCS7D01G497400.1 | Wheat | nucleus | 91.49 | 92.05 |
| TraesCS7B01G418400.1 | Wheat | nucleus | 82.98 | 83.74 |
| TraesCS7B01G419400.1 | Wheat | nucleus | 80.85 | 82.61 |
| TraesCS7B01G418600.1 | Wheat | nucleus | 70.21 | 79.93 |
| HORVU7Hr1G113850.4 | Barley | nucleus, plastid | 88.15 | 71.43 |
| Os06t0649000-01 | Rice | nucleus | 65.35 | 63.8 |
| Zm00001d036726_P001 | Maize | nucleus | 63.83 | 61.05 |
| EER90124 | Sorghum | nucleus | 62.31 | 59.94 |
| EER88729 | Sorghum | nucleus | 62.61 | 59.2 |
| Zm00001d046805_P001 | Maize | nucleus | 62.92 | 58.97 |
| TraesCS6B01G175100.2 | Wheat | nucleus | 57.45 | 53.24 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 40.73 | 47.86 |
| Bra019123.1-P | Field mustard | nucleus | 26.44 | 44.85 |
| Solyc12g042590.1.1 | Tomato | nucleus | 27.36 | 41.67 |
| PGSC0003DMT400073710 | Potato | nucleus | 27.36 | 41.47 |
| Bra008435.1-P | Field mustard | nucleus | 36.47 | 41.38 |
| CDY22299 | Canola | nucleus | 36.47 | 41.38 |
| KRH47344 | Soybean | nucleus | 38.91 | 41.16 |
| Solyc08g067340.2.1 | Tomato | nucleus | 31.61 | 41.11 |
| KRH23643 | Soybean | nucleus | 38.6 | 41.1 |
| CDY67287 | Canola | nucleus | 36.17 | 41.03 |
| KRH61669 | Soybean | nucleus | 27.36 | 40.91 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 38.3 | 40.51 |
| CDX67971 | Canola | nucleus | 36.47 | 40.4 |
| Bra003588.1-P | Field mustard | nucleus | 36.47 | 40.4 |
| Bra035148.1-P | Field mustard | nucleus | 36.78 | 40.33 |
| CDX87347 | Canola | nucleus | 36.78 | 40.33 |
| KRH15674 | Soybean | nucleus | 34.35 | 40.07 |
| AT1G80840.1 | Thale cress | nucleus | 36.78 | 40.07 |
| Solyc08g067360.2.1 | Tomato | nucleus | 31.31 | 39.92 |
| PGSC0003DMT400019061 | Potato | nucleus | 30.7 | 39.92 |
| CDX88573 | Canola | nucleus | 36.47 | 39.87 |
| PGSC0003DMT400019058 | Potato | nucleus | 31.61 | 39.85 |
| KRH44560 | Soybean | nucleus | 37.69 | 39.62 |
| CDX79347 | Canola | nucleus | 35.56 | 39.26 |
| CDX72327 | Canola | nucleus | 33.74 | 38.95 |
| CDX75196 | Canola | nucleus | 33.13 | 38.52 |
| AT2G25000.1 | Thale cress | nucleus | 31.31 | 38.01 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 36.47 | 37.85 |
| KRH09652 | Soybean | nucleus | 37.69 | 37.58 |
| Bra010220.1-P | Field mustard | nucleus | 34.35 | 36.69 |
| CDY39879 | Canola | nucleus | 34.04 | 36.48 |
| CDX68787 | Canola | nucleus | 34.95 | 36.05 |
| Bra011299.1-P | Field mustard | nucleus | 34.65 | 35.96 |
| AT4G31800.1 | Thale cress | nucleus | 33.43 | 35.48 |
| KRH05350 | Soybean | nucleus | 33.13 | 34.94 |
| TraesCS5B01G224000.1 | Wheat | nucleus | 34.35 | 34.14 |
| TraesCS5B01G224100.1 | Wheat | nucleus | 33.74 | 33.64 |
| Solyc03g116890.2.1 | Tomato | nucleus | 34.95 | 32.86 |
| Solyc06g068460.2.1 | Tomato | nucleus | 35.87 | 32.78 |
| PGSC0003DMT400073396 | Potato | nucleus | 35.87 | 32.78 |
| PGSC0003DMT400051047 | Potato | nucleus | 34.95 | 32.39 |
| KRH52329 | Soybean | nucleus | 30.4 | 32.36 |
| Bra023983.1-P | Field mustard | nucleus | 33.13 | 31.59 |
| CDY70096 | Canola | nucleus | 33.13 | 31.59 |
| TraesCS3B01G130000.1 | Wheat | nucleus | 22.8 | 15.31 |
| TraesCS3B01G199000.2 | Wheat | nucleus | 24.92 | 14.14 |
| TraesCS1B01G434300.1 | Wheat | nucleus | 25.53 | 13.42 |
| TraesCS6B01G357600.1 | Wheat | nucleus | 21.58 | 12.68 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 |
| PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF33 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS7B01G418500 |
| EnsemblPlants:TraesCS7B01G418500.2 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7B:-:686887321..686888423
Molecular Weight (calculated)
35418.7 Da
IEP (calculated)
9.730
GRAVY (calculated)
-0.651
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEQWMMGQT SLSLGLNVGR PTARRGAPPV TKVLVEEDFM SSKKNHEVEA LQAELRRVGE ENRRLSDMLR ALVAKYSDLQ GKVSGMMAAA AAANNQQSLS
101: TSEGGSAASP SRKRARSDSL DTAGRNPSPP LAAAVSINVV PDRDQVECTS VHEPCNSKRV RADECKASRV SKLYVHADPS DLSLQVVKDG YQWRKYGQKV
201: TKDNPCPRAY FRCSFAPSCQ VKKKAQRSAE DNTVLVATYE GEHNHAQPPK MQGSGGRKSA DAAAVRASPA PPLAQQQPRQ QSTTEAGSAA DRKNLAEQMA
301: ATLTRDPGFK AALVSALSGR ILELSPSDS
101: TSEGGSAASP SRKRARSDSL DTAGRNPSPP LAAAVSINVV PDRDQVECTS VHEPCNSKRV RADECKASRV SKLYVHADPS DLSLQVVKDG YQWRKYGQKV
201: TKDNPCPRAY FRCSFAPSCQ VKKKAQRSAE DNTVLVATYE GEHNHAQPPK MQGSGGRKSA DAAAVRASPA PPLAQQQPRQ QSTTEAGSAA DRKNLAEQMA
301: ATLTRDPGFK AALVSALSGR ILELSPSDS
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.