Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G065380.2 | Barley | nucleus | 59.78 | 93.1 |
| TraesCS5A01G225500.1 | Wheat | nucleus | 92.62 | 92.62 |
| Zm00001d020495_P001 | Maize | nucleus | 52.03 | 53.01 |
| Os09t0417800-01 | Rice | nucleus | 60.89 | 51.89 |
| KXG35639 | Sorghum | nucleus | 53.51 | 49.15 |
| Bra019123.1-P | Field mustard | nucleus | 26.94 | 37.63 |
| Solyc12g042590.1.1 | Tomato | nucleus | 28.78 | 36.11 |
| PGSC0003DMT400073710 | Potato | nucleus | 28.41 | 35.48 |
| Solyc08g067340.2.1 | Tomato | nucleus | 31.73 | 33.99 |
| Solyc08g067360.2.1 | Tomato | nucleus | 32.1 | 33.72 |
| PGSC0003DMT400019058 | Potato | nucleus | 32.1 | 33.33 |
| TraesCS5D01G232800.1 | Wheat | nucleus | 40.59 | 33.23 |
| PGSC0003DMT400019061 | Potato | nucleus | 31.0 | 33.2 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 33.95 | 32.86 |
| KRH61669 | Soybean | nucleus | 26.2 | 32.27 |
| CDX79347 | Canola | nucleus | 35.06 | 31.88 |
| TraesCS7D01G497400.1 | Wheat | nucleus | 38.38 | 31.8 |
| CDX75196 | Canola | nucleus | 33.21 | 31.8 |
| KRH15674 | Soybean | nucleus | 32.84 | 31.56 |
| KRH47344 | Soybean | nucleus | 36.16 | 31.51 |
| KRH44560 | Soybean | nucleus | 36.16 | 31.31 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 35.79 | 31.19 |
| KRH23643 | Soybean | nucleus | 35.42 | 31.07 |
| CDY22299 | Canola | nucleus | 33.21 | 31.03 |
| CDY67287 | Canola | nucleus | 33.21 | 31.03 |
| Bra008435.1-P | Field mustard | nucleus | 33.21 | 31.03 |
| Bra035148.1-P | Field mustard | nucleus | 34.32 | 31.0 |
| CDX87347 | Canola | nucleus | 34.32 | 31.0 |
| TraesCS5D01G232900.1 | Wheat | nucleus | 42.44 | 31.0 |
| CDX67971 | Canola | nucleus | 33.95 | 30.98 |
| Bra003588.1-P | Field mustard | nucleus | 33.95 | 30.98 |
| CDX88573 | Canola | nucleus | 34.32 | 30.9 |
| AT1G80840.1 | Thale cress | nucleus | 34.32 | 30.79 |
| CDX72327 | Canola | nucleus | 32.1 | 30.53 |
| AT2G25000.1 | Thale cress | nucleus | 30.26 | 30.26 |
| TraesCS7D01G497800.1 | Wheat | nucleus | 35.79 | 29.75 |
| CDY39879 | Canola | nucleus | 33.58 | 29.64 |
| Bra010220.1-P | Field mustard | nucleus | 33.21 | 29.22 |
| AT4G31800.1 | Thale cress | nucleus | 33.21 | 29.03 |
| TraesCS6D01G136200.1 | Wheat | nucleus | 37.27 | 29.02 |
| KRH09652 | Soybean | nucleus | 34.69 | 28.48 |
| Bra011299.1-P | Field mustard | nucleus | 33.21 | 28.39 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 33.21 | 28.39 |
| TraesCS7D01G497700.1 | Wheat | nucleus | 34.32 | 28.35 |
| CDX68787 | Canola | nucleus | 32.47 | 27.59 |
| KRH05350 | Soybean | nucleus | 31.73 | 27.56 |
| Solyc06g068460.2.1 | Tomato | nucleus | 35.79 | 26.94 |
| PGSC0003DMT400073396 | Potato | nucleus | 35.42 | 26.67 |
| KRH52329 | Soybean | nucleus | 30.26 | 26.54 |
| TraesCS7D01G497300.1 | Wheat | plastid | 35.79 | 26.08 |
| Solyc03g116890.2.1 | Tomato | nucleus | 32.84 | 25.43 |
| PGSC0003DMT400051047 | Potato | nucleus | 33.21 | 25.35 |
| CDY70096 | Canola | nucleus | 32.1 | 25.22 |
| Bra023983.1-P | Field mustard | nucleus | 32.1 | 25.22 |
| TraesCS3D01G113300.1 | Wheat | nucleus | 24.35 | 13.41 |
| TraesCS1D01G412500.1 | Wheat | nucleus | 27.31 | 12.52 |
| TraesCS6D01G306300.1 | Wheat | nucleus | 22.88 | 11.09 |
| TraesCS7D01G092600.1 | Wheat | nucleus | 24.72 | 11.07 |
| TraesCS7D01G092400.1 | Wheat | nucleus | 24.35 | 10.91 |
| TraesCS7D01G092300.1 | Wheat | nucleus | 24.35 | 10.91 |
| TraesCS3D01G173300.2 | Wheat | plastid | 25.09 | 10.69 |
| TraesCS7D01G092500.2 | Wheat | nucleus | 23.25 | 10.66 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009617 | GO:GO:0009620 | GO:GO:0009719 | GO:GO:0009751 |
| GO:GO:0009987 | GO:GO:0010200 | GO:GO:0043565 | GO:GO:1900425 | InterPro:IPR003657 | InterPro:IPR036576 |
| PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF36 | SMART:SM00774 | SUPFAM:SSF118290 |
| EnsemblPlantsGene:TraesCS5D01G232700 | EnsemblPlants:TraesCS5D01G232700.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : |
Description
No Description!
Coordinates
chr5D:+:339968158..339969284
Molecular Weight (calculated)
29465.6 Da
IEP (calculated)
8.133
GRAVY (calculated)
-0.612
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGSSCPTD SAGLLPPFAG SPTAEGLEEK LRRVREENRR LAGTLGAILA DRPDLRALAR APASAVATTR APSASASNAA REEAAGVTVE PQPKVRTVCA
101: RAEPADTDAN LGVKDGYQWR KYGQKVTRDN PHPRSYFRCA FAPSCPVKKK VQRDAEDRSK LVATYEGEHN HAKSPEREFV GNESTGHAGS RPCSVSINPS
201: GCTIRLEDMT NHGSGSRLDL ETIRREVVTP EFQKLLVEKM VNSLKNDADF MHALTYAVAE RILENIPARL S
101: RAEPADTDAN LGVKDGYQWR KYGQKVTRDN PHPRSYFRCA FAPSCPVKKK VQRDAEDRSK LVATYEGEHN HAKSPEREFV GNESTGHAGS RPCSVSINPS
201: GCTIRLEDMT NHGSGSRLDL ETIRREVVTP EFQKLLVEKM VNSLKNDADF MHALTYAVAE RILENIPARL S
001: MLARVCESYN ELHNHLEKLQ SRQSPEIEQT DIPIKKRKQD PDEFLGFPIG LSSGKTENSS SNEDHHHHHQ QHEQKNQLLS CKRPVTDSFN KAKVSTVYVP
101: TETSDTSLTV KDGFQWRKYG QKVTRDNPSP RAYFRCSFAP SCPVKKKVQR SAEDPSLLVA TYEGTHNHLG PNASEGDATS QGGSSTVTLD LVNGCHRLAL
201: EKNERDNTMQ EVLIQQMASS LTKDSKFTAA LAAAISGRLM EQSRT
101: TETSDTSLTV KDGFQWRKYG QKVTRDNPSP RAYFRCSFAP SCPVKKKVQR SAEDPSLLVA TYEGTHNHLG PNASEGDATS QGGSSTVTLD LVNGCHRLAL
201: EKNERDNTMQ EVLIQQMASS LTKDSKFTAA LAAAISGRLM EQSRT
Arabidopsis Description
WRKY18WRKY like transcription factor [Source:UniProtKB/TrEMBL;Acc:Q0WTZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.