Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G418400.1 | Wheat | nucleus | 91.93 | 90.8 |
| TraesCS7A01G508700.1 | Wheat | nucleus | 90.37 | 89.81 |
| TraesCS7B01G418600.1 | Wheat | nucleus | 79.19 | 88.24 |
| HORVU7Hr1G113830.1 | Barley | nucleus | 84.78 | 85.58 |
| TraesCS7B01G418500.2 | Wheat | nucleus | 82.61 | 80.85 |
| TraesCS7D01G497300.1 | Wheat | plastid | 91.61 | 79.3 |
| Os06t0649000-01 | Rice | nucleus | 62.11 | 59.35 |
| Zm00001d036726_P001 | Maize | nucleus | 60.56 | 56.69 |
| EER90124 | Sorghum | nucleus | 59.01 | 55.56 |
| EER88729 | Sorghum | nucleus | 59.32 | 54.89 |
| Zm00001d046805_P001 | Maize | nucleus | 59.01 | 54.13 |
| TraesCS6B01G175100.2 | Wheat | nucleus | 55.28 | 50.14 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 39.75 | 45.71 |
| Bra019123.1-P | Field mustard | nucleus | 25.78 | 42.78 |
| PGSC0003DMT400073710 | Potato | nucleus | 27.33 | 40.55 |
| CDY22299 | Canola | nucleus | 36.34 | 40.34 |
| Bra008435.1-P | Field mustard | nucleus | 36.34 | 40.34 |
| Solyc12g042590.1.1 | Tomato | nucleus | 27.02 | 40.28 |
| CDY67287 | Canola | nucleus | 36.02 | 40.0 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 38.51 | 39.87 |
| CDX67971 | Canola | nucleus | 36.65 | 39.73 |
| Bra003588.1-P | Field mustard | nucleus | 36.65 | 39.73 |
| Bra035148.1-P | Field mustard | nucleus | 36.96 | 39.67 |
| CDX87347 | Canola | nucleus | 36.96 | 39.67 |
| Solyc08g067340.2.1 | Tomato | nucleus | 31.06 | 39.53 |
| CDX88573 | Canola | nucleus | 36.65 | 39.2 |
| KRH61669 | Soybean | nucleus | 26.71 | 39.09 |
| PGSC0003DMT400019058 | Potato | nucleus | 31.68 | 39.08 |
| AT1G80840.1 | Thale cress | nucleus | 36.65 | 39.07 |
| KRH15674 | Soybean | nucleus | 34.16 | 39.01 |
| KRH23643 | Soybean | nucleus | 37.27 | 38.84 |
| PGSC0003DMT400019061 | Potato | nucleus | 30.43 | 38.74 |
| CDX79347 | Canola | nucleus | 35.71 | 38.59 |
| KRH47344 | Soybean | nucleus | 37.27 | 38.59 |
| Solyc08g067360.2.1 | Tomato | nucleus | 30.43 | 37.98 |
| CDX72327 | Canola | nucleus | 33.54 | 37.89 |
| CDX75196 | Canola | nucleus | 33.23 | 37.81 |
| AT2G25000.1 | Thale cress | nucleus | 31.37 | 37.27 |
| KRH44560 | Soybean | nucleus | 36.02 | 37.06 |
| KRH09652 | Soybean | nucleus | 36.65 | 35.76 |
| Bra010220.1-P | Field mustard | nucleus | 33.85 | 35.39 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 34.78 | 35.33 |
| CDY39879 | Canola | nucleus | 33.54 | 35.18 |
| CDX68787 | Canola | nucleus | 34.47 | 34.8 |
| Bra011299.1-P | Field mustard | nucleus | 33.85 | 34.38 |
| KRH05350 | Soybean | nucleus | 33.23 | 34.29 |
| TraesCS5B01G224100.1 | Wheat | nucleus | 34.47 | 33.64 |
| AT4G31800.1 | Thale cress | nucleus | 32.3 | 33.55 |
| TraesCS5B01G224000.1 | Wheat | nucleus | 34.16 | 33.23 |
| KRH52329 | Soybean | nucleus | 30.43 | 31.72 |
| PGSC0003DMT400073396 | Potato | nucleus | 35.09 | 31.39 |
| Solyc06g068460.2.1 | Tomato | nucleus | 34.78 | 31.11 |
| Bra023983.1-P | Field mustard | nucleus | 33.23 | 31.01 |
| CDY70096 | Canola | nucleus | 33.23 | 31.01 |
| Solyc03g116890.2.1 | Tomato | nucleus | 32.92 | 30.29 |
| PGSC0003DMT400051047 | Potato | nucleus | 33.23 | 30.14 |
| TraesCS3B01G130000.1 | Wheat | nucleus | 22.67 | 14.9 |
| TraesCS3B01G199000.2 | Wheat | nucleus | 24.22 | 13.45 |
| TraesCS1B01G434300.1 | Wheat | nucleus | 25.47 | 13.1 |
| TraesCS6B01G357600.1 | Wheat | nucleus | 21.43 | 12.32 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 |
| PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF33 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS7B01G419400 |
| EnsemblPlants:TraesCS7B01G419400.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7B:+:688163090..688164174
Molecular Weight (calculated)
34757.0 Da
IEP (calculated)
10.151
GRAVY (calculated)
-0.612
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEQWMIGQT SLSLGLNVGG PRGAPPGTRV LVEEDFMSSK KNHEVEALEA ELRRVGEENR RLSDMLRALV AKYADLQGKV SGMMAVANNH HQSSTTSEGG
101: SSASATRKRA RSDSLDTASR NPSPPLTAAG ASGRFAVSVT VVPDQADCTP LHQPCNSKRV RADEVKASRV SKLYVHADPS DINLVVKDGY QWRKYGQKVT
201: KDNPCPRAYF RCSFAPSCQV KKKVQRSAED KTVLVATYDG DHNHAPPPKQ QRSGGRKSGD AAAVRASPAP VIVQQQRKQE ASTAEQVADR KNLVEQMAAT
301: LTRDPGFKAA LVSALSGRIP VA
101: SSASATRKRA RSDSLDTASR NPSPPLTAAG ASGRFAVSVT VVPDQADCTP LHQPCNSKRV RADEVKASRV SKLYVHADPS DINLVVKDGY QWRKYGQKVT
201: KDNPCPRAYF RCSFAPSCQV KKKVQRSAED KTVLVATYDG DHNHAPPPKQ QRSGGRKSGD AAAVRASPAP VIVQQQRKQE ASTAEQVADR KNLVEQMAAT
301: LTRDPGFKAA LVSALSGRIP VA
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.