Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, secretory
BaCelLo:secretory
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003588.1-P
Bra008435.1-P
Bra010220.1-P
Bra011299.1-P
Bra019123.1-P
Bra023983.1-P
Bra035148.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G31800.1 Bra003588.1-P AT1G80840.1 16603654
AT4G31800.1 Bra008435.1-P AT1G80840.1 16603654
AT4G31800.1 Bra035148.1-P AT1G80840.1 16603654
AT4G31800.1 Bra003588.1-P AT1G80840.1 18776063
AT4G31800.1 Bra008435.1-P AT1G80840.1 18776063
AT4G31800.1 Bra035148.1-P AT1G80840.1 18776063
AT4G31800.1 Bra003588.1-P AT1G80840.1 21798944
AT4G31800.1 Bra008435.1-P AT1G80840.1 21798944
AT4G31800.1 Bra035148.1-P AT1G80840.1 21798944
AT4G31800.1 Bra010220.1-P AT2G25000.1 16603654
AT4G31800.1 Bra011299.1-P AT4G31800.1 16603654
AT4G31800.1 Bra019123.1-P AT4G31800.1 16603654
AT4G31800.1 Bra023983.1-P AT4G31800.1 16603654
AT4G31800.1 Bra011299.1-P AT4G31800.1 21798944
AT4G31800.1 Bra019123.1-P AT4G31800.1 21798944
AT4G31800.1 Bra023983.1-P AT4G31800.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX72327 Canola nucleus 80.93 55.09
Bra010220.1-P Field mustard nucleus 78.35 49.35
Bra011299.1-P Field mustard nucleus 77.84 47.63
AT4G31800.1 Thale cress nucleus 75.77 47.42
GSMUA_Achr7P19340_001 Banana nucleus 45.88 46.35
GSMUA_Achr2P05100_001 Banana nucleus 43.81 44.74
Bra023983.1-P Field mustard nucleus 79.38 44.64
HORVU5Hr1G065380.2 Barley nucleus 36.6 40.8
GSMUA_Achr5P16460_001 Banana nucleus 48.97 40.43
GSMUA_Achr10P... Banana nucleus 45.88 38.36
GSMUA_Achr7P16090_001 Banana endoplasmic reticulum, nucleus, plastid 42.78 37.22
GSMUA_Achr11P... Banana nucleus 44.85 35.51
PGSC0003DMT400019058 Potato nucleus 47.42 35.25
KRH15674 Soybean nucleus 50.0 34.4
PGSC0003DMT400019061 Potato nucleus 44.85 34.39
Solyc08g067340.2.1 Tomato nucleus 44.85 34.39
Solyc08g067360.2.1 Tomato nucleus 45.36 34.11
Bra008435.1-P Field mustard nucleus 48.97 32.76
VIT_04s0008g05760.t01 Wine grape nucleus 53.09 32.49
GSMUA_Achr7P05200_001 Banana nucleus 46.39 32.14
GSMUA_Achr3P13440_001 Banana nucleus 45.36 32.0
Bra003588.1-P Field mustard nucleus 48.97 31.99
Bra035148.1-P Field mustard nucleus 48.45 31.33
KRH05350 Soybean nucleus 50.0 31.09
GSMUA_Achr10P... Banana nucleus 45.88 30.9
KRH61669 Soybean nucleus 34.54 30.45
GSMUA_Achr4P01930_001 Banana extracellular, golgi 43.3 29.07
Zm00001d020492_P001 Maize nucleus 43.81 28.15
Os09t0417600-02 Rice nucleus 47.42 28.13
GSMUA_Achr1P10080_001 Banana nucleus 48.45 28.06
TraesCS5D01G232700.1 Wheat nucleus 37.63 26.94
TraesCS5B01G224000.1 Wheat nucleus 45.88 26.89
TraesCS5D01G232800.1 Wheat nucleus 45.88 26.89
TraesCS5B01G224100.1 Wheat nucleus 45.36 26.67
TraesCS7D01G497400.1 Wheat nucleus 44.85 26.61
TraesCS5A01G225600.1 Wheat nucleus 45.36 26.59
TraesCS5A01G225500.1 Wheat nucleus 37.11 26.57
TraesCS7B01G418500.2 Wheat nucleus 44.85 26.44
Zm00001d020495_P001 Maize nucleus 36.08 26.32
EER98905 Sorghum nucleus, plastid 44.33 26.3
TraesCS6A01G146900.1 Wheat nucleus 47.42 26.29
TraesCS7A01G508700.1 Wheat nucleus 43.81 26.23
TraesCS6D01G136200.1 Wheat nucleus 46.91 26.15
Os02t0181300-01 Rice nucleus 46.91 26.15
TraesCS7B01G418400.1 Wheat nucleus 43.81 26.07
HORVU7Hr1G113830.1 Barley nucleus 42.78 26.02
TraesCS7A01G508800.1 Wheat nucleus 43.81 25.99
Zm00001d015515_P001 Maize nucleus 46.39 25.94
Zm00001d053746_P001 Maize nucleus 42.78 25.86
TraesCS7B01G419400.1 Wheat nucleus 42.78 25.78
TraesCS7D01G497800.1 Wheat nucleus 43.3 25.77
KXG35639 Sorghum nucleus 39.18 25.76
TraesCS7D01G497700.1 Wheat nucleus 43.3 25.61
HORVU6Hr1G028790.1 Barley nucleus 46.39 25.5
TraesCS6B01G175100.2 Wheat nucleus 45.88 25.07
Os06t0649000-01 Rice nucleus 43.3 24.93
KRH52329 Soybean nucleus 39.69 24.92
Zm00001d005749_P001 Maize nucleus 44.85 24.79
EES04642 Sorghum nucleus 46.39 24.73
EER90124 Sorghum nucleus 43.3 24.56
Zm00001d046805_P001 Maize nucleus 44.33 24.5
Os09t0417800-01 Rice nucleus 39.69 24.21
EER88729 Sorghum nucleus 43.3 24.14
TraesCS7A01G509000.1 Wheat nucleus 43.3 24.14
TraesCS5D01G232900.1 Wheat nucleus 45.88 23.99
TraesCS7B01G418600.1 Wheat nucleus 35.57 23.88
Zm00001d036726_P001 Maize nucleus 41.75 23.55
TraesCS7D01G497300.1 Wheat plastid 44.85 23.39
HORVU5Hr1G065420.15 Barley nucleus 45.36 22.51
HORVU7Hr1G113850.4 Barley nucleus, plastid 44.33 21.18
Bra025693.1-P Field mustard nucleus 30.41 20.56
Bra004285.1-P Field mustard nucleus 25.26 14.94
Bra031053.1-P Field mustard nucleus 34.02 14.04
Bra016535.1-P Field mustard nucleus 33.51 13.71
Bra036315.1-P Field mustard nucleus 34.54 13.67
Bra007884.1-P Field mustard nucleus 26.8 13.58
Bra006283.1-P Field mustard nucleus 35.57 13.09
Bra029491.1-P Field mustard nucleus 32.99 13.01
Bra027057.1-P Field mustard nucleus 36.6 12.86
Bra023505.1-P Field mustard nucleus 34.02 12.79
Bra013584.1-P Field mustard nucleus 34.54 12.45
Bra040505.1-P Field mustard nucleus 34.02 12.34
Bra008719.1-P Field mustard nucleus 34.54 12.16
Bra000793.1-P Field mustard nucleus 32.47 12.14
Bra034482.1-P Field mustard nucleus 28.35 10.85
Bra016263.1-P Field mustard nucleus 30.41 7.89
Bra025692.1-P Field mustard nucleus 1.55 1.24
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80EnsemblPlantsGene:Bra019123EnsemblPlants:Bra019123.1EnsemblPlants:Bra019123.1-PGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0043565InterPro:IPR003657InterPro:IPR036576
UniProt:M4DRI0PFAM:PF03106PFscan:PS50811PANTHER:PTHR31429PANTHER:PTHR31429:SF32SMART:SM00774
SUPFAM:SSF118290UniParc:UPI00025411CCInterPro:WRKY_domInterPro:WRKY_dom_sf::
Description
AT4G31800 (E=2e-056) WRKY18, ATWRKY18 | WRKY18; transcription factor
Coordinates
chrA03:-:26211525..26212688
Molecular Weight (calculated)
20826.5 Da
IEP (calculated)
8.108
GRAVY (calculated)
-0.436
Length
194 amino acids
Sequence
(BLAST)
001: MIDATVCGKG RYTLVKDVDD VENGAYDKPL PCFGCGIGCG KRPVTDSFNK ANVSTVYVPS DSSDTSLTVK DGYQWRKYGQ KVTRDNPSPR AYFRCSFAPS
101: CPVKKKVQRS AEDPSILVAT YEGTHNHLGP NGSEGDVTSQ VGSSTVTLDL VHSGQGTMQE VLVQQMASSL TKDSKFTAAL AAAISGRLME QSRT
Best Arabidopsis Sequence Match ( AT4G31800.1 )
(BLAST)
001: MDGSSFLDIS LDLNTNPFSA KLPKKEVSVL ASTHLKRKWL EQDESASELR EELNRVNSEN KKLTEMLARV CESYNELHNH LEKLQSRQSP EIEQTDIPIK
101: KRKQDPDEFL GFPIGLSSGK TENSSSNEDH HHHHQQHEQK NQLLSCKRPV TDSFNKAKVS TVYVPTETSD TSLTVKDGFQ WRKYGQKVTR DNPSPRAYFR
201: CSFAPSCPVK KKVQRSAEDP SLLVATYEGT HNHLGPNASE GDATSQGGSS TVTLDLVNGC HRLALEKNER DNTMQEVLIQ QMASSLTKDS KFTAALAAAI
301: SGRLMEQSRT
Arabidopsis Description
WRKY18WRKY like transcription factor [Source:UniProtKB/TrEMBL;Acc:Q0WTZ3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.