Factsheet for Bra034482.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08634	Canola	nucleus	91.32	92.05
CDY24892	Canola	nucleus	89.35	86.45
AT1G62300.1	Thale cress	nucleus	81.85	75.05
Bra027057.1-P	Field mustard	nucleus	81.66	75.0
Solyc02g032950.2.1	Tomato	nucleus	46.15	46.99
PGSC0003DMT400056725	Potato	nucleus	45.96	46.98
Bra013584.1-P	Field mustard	nucleus	48.52	45.72
GSMUA_Achr3P31130_001	Banana	mitochondrion, nucleus	31.16	45.14
VIT_10s0116g01200.t01	Wine grape	nucleus	47.53	45.05
GSMUA_Achr3P03090_001	Banana	nucleus	33.92	45.03
KRH36485	Soybean	nucleus	47.93	44.92
KRH11472	Soybean	nucleus	48.92	44.52
GSMUA_Achr5P16750_001	Banana	nucleus	42.41	44.24
PGSC0003DMT400042400	Potato	nucleus	47.73	43.76
KRH02033	Soybean	nucleus	42.01	43.56
Solyc02g080890.2.1	Tomato	nucleus	47.14	43.45
Bra000793.1-P	Field mustard	nucleus	43.98	42.97
GSMUA_Achr10P...	Banana	nucleus	42.01	42.94
GSMUA_Achr2P15200_001	Banana	nucleus	44.97	42.86
KRH51128	Soybean	nucleus, plastid	43.59	42.75
GSMUA_Achr6P13630_001	Banana	nucleus	43.2	41.79
Bra029491.1-P	Field mustard	nucleus	39.65	40.85
GSMUA_Achr6P05880_001	Banana	nucleus	38.07	40.55
GSMUA_Achr10P...	Banana	nucleus	40.63	40.39
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	35.11	36.48
Zm00001d039245_P001	Maize	nucleus	36.49	34.2
TraesCS3A01G167200.1	Wheat	nucleus	38.26	33.74
TraesCS3B01G199000.2	Wheat	nucleus	38.46	33.62
EES02155	Sorghum	nucleus	36.88	32.81
HORVU3Hr1G033740.2	Barley	nucleus, plastid	38.26	30.84
TraesCS3D01G173300.2	Wheat	plastid	38.26	30.5
Bra036315.1-P	Field mustard	nucleus	28.6	29.59
Bra019123.1-P	Field mustard	nucleus	10.85	28.35
Bra007884.1-P	Field mustard	nucleus	20.91	27.68
Bra004285.1-P	Field mustard	nucleus	16.96	26.22
Bra008435.1-P	Field mustard	nucleus	14.99	26.21
Bra010220.1-P	Field mustard	nucleus	15.58	25.65
Bra011299.1-P	Field mustard	nucleus	15.58	24.92
Bra035148.1-P	Field mustard	nucleus	14.6	24.67
Bra016535.1-P	Field mustard	nucleus	22.88	24.47
Bra025693.1-P	Field mustard	nucleus	13.81	24.39
Bra003588.1-P	Field mustard	nucleus	14.0	23.91
Bra031053.1-P	Field mustard	nucleus	21.89	23.62
Bra006283.1-P	Field mustard	nucleus	23.27	22.39
Bra040505.1-P	Field mustard	nucleus	23.27	22.06
Bra023983.1-P	Field mustard	nucleus	14.99	22.03
Bra023505.1-P	Field mustard	nucleus	21.89	21.51
Os01t0246700-01	Rice	nucleus	17.36	21.31
Bra008719.1-P	Field mustard	nucleus	22.29	20.51
Bra025692.1-P	Field mustard	nucleus	7.5	15.77
Bra016263.1-P	Field mustard	nucleus	18.34	12.43

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra034482	EnsemblPlants:Bra034482.1	EnsemblPlants:Bra034482.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	UniProt:M4F089	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF31
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000253E564	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

AT1G62300 (E=3e-147) WRKY6, ATWRKY6 | WRKY6; transcription factor

Coordinates

chrScaffold000096:-:241928..244473

Molecular Weight (calculated)

55323.5 Da

IEP (calculated)

6.201

GRAVY (calculated)

-0.703

Length

507 amino acids

Sequence
(BLAST)

001: MDIGWFGLTL DSSSLDLVIP KCFKSNNTHR RFSTPLTMST AGDDVDDNKT KISNAARDFR FPVSLSGICD RQDNDLSSGV AGENDCAVPG EVDFFSDEKS
101: RVCYVEDAGF RVKKEVQDDR TDVNTGLNLR TRSDQSVTDD EESYEMEDKC AKNESIKLQD ELKKVTIENQ KLRELLTQAS NSYTSLQMHI VSLMQQQQKQ
201: QNKAIEATEN HEETIVPRQF LDLVPSRAPG EAEDVSNSST EDRTRSGGSS AAERRNNEVR DGKRLGREES PETESNKVQK VNNSSPTTFD QPGEAIMRKA
301: RVSVRARSEA PMISDGCQWR KYGQKMAKGN PCPRAYYRCT MATGCPVRKQ VPLPPAAVAM ASTTTAAANM LLSGSMSSHD GMMNPTNLLA RAVLPCSTSM
401: ATISASAPFP TVTLDLTHSP PPPNGSNSSP STAAANNNNH HNSLMQRPQQ QQMTNIPPAA FSQPHAVANT ITALTTDPNF TAALAAVITS MINGSKHHEG
501: EGNNKNQ

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.