Factsheet for HORVU3Hr1G033740.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G167200.1	Wheat	nucleus	87.44	95.65
TraesCS3B01G199000.2	Wheat	nucleus	86.96	94.31
TraesCS3D01G173300.2	Wheat	plastid	94.59	93.55
Os01t0246700-01	Rice	nucleus	50.08	76.27
Zm00001d039245_P001	Maize	nucleus	54.69	63.59
EES02155	Sorghum	nucleus	55.96	61.75
GSMUA_Achr3P03090_001	Banana	nucleus	30.68	50.52
CDX97845	Canola	nucleus	19.24	50.21
Solyc02g032950.2.1	Tomato	nucleus	36.73	46.39
GSMUA_Achr5P16750_001	Banana	nucleus	35.61	46.09
PGSC0003DMT400056725	Potato	nucleus	35.93	45.56
VIT_10s0116g01200.t01	Wine grape	nucleus	37.36	43.93
Solyc02g080890.2.1	Tomato	nucleus	38.0	43.45
PGSC0003DMT400042400	Potato	nucleus	38.16	43.4
GSMUA_Achr10P...	Banana	nucleus	34.18	43.35
GSMUA_Achr2P15200_001	Banana	nucleus	36.25	42.86
GSMUA_Achr6P13630_001	Banana	nucleus	35.61	42.75
GSMUA_Achr6P05880_001	Banana	nucleus	31.48	41.6
GSMUA_Achr10P...	Banana	nucleus	32.91	40.59
KRH36485	Soybean	nucleus	34.5	40.11
KRH02033	Soybean	nucleus	31.16	40.08
PGSC0003DMT400038852	Potato	nucleus	35.29	39.86
CDX82900	Canola	nucleus	32.75	39.54
KRH11472	Soybean	nucleus	34.98	39.5
AT1G62300.1	Thale cress	nucleus	34.66	39.42
VIT_12s0059g00880.t01	Wine grape	nucleus	36.88	39.12
KRH51128	Soybean	nucleus, plastid	32.11	39.07
AT4G04450.1	Thale cress	nucleus	32.75	39.02
CDY12937	Canola	nucleus	34.02	38.77
CDY19535	Canola	nucleus	34.02	38.77
AT4G22070.1	Thale cress	nucleus	33.07	38.66
CDY21301	Canola	nucleus	31.16	38.66
Bra027057.1-P	Field mustard	nucleus	33.86	38.59
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	29.89	38.52
Bra013584.1-P	Field mustard	nucleus	32.91	38.48
Bra034482.1-P	Field mustard	nucleus	30.84	38.26
CDX90863	Canola	nucleus	30.84	38.26
Bra000793.1-P	Field mustard	nucleus	31.32	37.96
CDY24892	Canola	nucleus	31.48	37.79
CDY08634	Canola	nucleus	30.21	37.77
KRH22585	Soybean	nucleus	36.25	37.13
CDX94553	Canola	nucleus	28.93	37.07
CDY16669	Canola	nucleus	28.46	36.38
Solyc07g051840.2.1	Tomato	nucleus	36.25	36.13
Bra029491.1-P	Field mustard	nucleus	27.82	35.57
KRH25355	Soybean	nucleus	33.39	34.2
KRH56160	Soybean	nucleus	33.39	33.44
HORVU5Hr1G065380.2	Barley	nucleus	8.9	32.18
HORVU3Hr1G020210.2	Barley	nucleus	22.89	27.38
HORVU7Hr1G021260.1	Barley	nucleus	25.6	26.44
HORVU7Hr1G113830.1	Barley	nucleus	12.88	25.39
HORVU6Hr1G028790.1	Barley	nucleus	13.67	24.36
HORVU6Hr1G079710.2	Barley	nucleus	21.46	21.77
HORVU5Hr1G065420.15	Barley	nucleus	13.51	21.74
HORVU7Hr1G113850.4	Barley	nucleus, plastid	13.35	20.69

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A287KQ18	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:HORVU3Hr1G033740	EnsemblPlants:HORVU3Hr1G033740.2	InterPro:IPR003657
InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF31	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI000B47CEA5	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chrchr3H:-:178816679..178819800

Molecular Weight (calculated)

66109.5 Da

IEP (calculated)

8.664

GRAVY (calculated)

-0.541

Length

629 amino acids

Sequence
(BLAST)

001: RGLPASSAFF KRAPSYRGET SDSSLFRSLR HVSLSPSLSP SPRSLPSASV SLFSKRLSIC MDKGHLGGGG GGGGLLALDA SPRQLGFLNL LSPAPFLRNM
101: EADDGGGGGR GRRSIEVDFF SDEKKNMKKS RASAGADADD QKDQASAAGL AIKKEDLTIN LLSGNNTRRD RSMVVDDDGA SRADEDSNGR NTGELAAMQA
201: ELSRMNDENQ RLRGMLTQVN NSYHALQMHL VTLMQQRTQM PPAQPQQPPT HEEGKNESAI VPRQFLGLGP SGASAEVAEE PSNSSTEVGS PRRSSSNGNE
301: DPERGDNPDG PSTAGWLPGR GMTQQQQLGA AAKGHDQQAQ EATMRKARVS VRARSEAPII ADGCQWRKYG QKMAKGNPCP RAYYRCTMAT GCPVRKQVQR
401: CAEDRTILIT TYEGTHNHPL PPAAMAMAST TSAAASMLLS GSMPSADGAG LMSSNFLART VLPCSSSMAT ISASAPFPTV TLDLTHAPPG APNAMPLNVA
501: RPHAPGQFHV PMPGGGMAPA FAMPPQMLYN QSKFSGLQMS SDSVDAGQFA QPRQPMGLPG QLSDSVSAAA AAITADPNFT VALAAAISSI MAGQHAAGNS
601: NANNNNTTKN NVTTTSNNTT SNNTNSETQ

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.