Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G136200.1 | Wheat | nucleus | 92.35 | 93.68 |
| TraesCS6A01G146900.1 | Wheat | nucleus | 92.35 | 93.14 |
| TraesCS6B01G175100.2 | Wheat | nucleus | 92.35 | 91.83 |
| Os02t0181300-01 | Rice | nucleus | 70.25 | 71.26 |
| Zm00001d015515_P001 | Maize | nucleus | 67.99 | 69.16 |
| EES04642 | Sorghum | nucleus | 69.97 | 67.86 |
| Zm00001d053746_P001 | Maize | nucleus | 61.47 | 67.6 |
| HORVU7Hr1G113830.1 | Barley | nucleus | 49.86 | 55.17 |
| HORVU7Hr1G113850.4 | Barley | nucleus, plastid | 54.67 | 47.54 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 37.39 | 47.14 |
| Bra019123.1-P | Field mustard | nucleus | 25.5 | 46.39 |
| PGSC0003DMT400073710 | Potato | nucleus | 28.05 | 45.62 |
| Solyc12g042590.1.1 | Tomato | nucleus | 27.2 | 44.44 |
| Solyc08g067340.2.1 | Tomato | nucleus | 31.73 | 44.27 |
| PGSC0003DMT400019061 | Potato | nucleus | 31.44 | 43.87 |
| KRH61669 | Soybean | nucleus | 26.91 | 43.18 |
| Solyc08g067360.2.1 | Tomato | nucleus | 30.88 | 42.25 |
| PGSC0003DMT400019058 | Potato | nucleus | 31.16 | 42.15 |
| CDX75196 | Canola | nucleus | 33.71 | 42.05 |
| KRH15674 | Soybean | nucleus | 33.43 | 41.84 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 36.83 | 41.8 |
| CDX72327 | Canola | nucleus | 33.43 | 41.4 |
| HORVU5Hr1G065380.2 | Barley | nucleus | 20.11 | 40.8 |
| AT2G25000.1 | Thale cress | nucleus | 30.88 | 40.22 |
| KRH23643 | Soybean | nucleus | 35.13 | 40.13 |
| KRH47344 | Soybean | nucleus | 35.13 | 39.87 |
| KRH44560 | Soybean | nucleus | 34.84 | 39.3 |
| Bra010220.1-P | Field mustard | nucleus | 33.71 | 38.64 |
| Bra008435.1-P | Field mustard | nucleus | 31.73 | 38.62 |
| CDY22299 | Canola | nucleus | 31.73 | 38.62 |
| CDY39879 | Canola | nucleus | 33.43 | 38.44 |
| AT1G80840.1 | Thale cress | nucleus | 32.86 | 38.41 |
| CDY67287 | Canola | nucleus | 31.44 | 38.28 |
| CDX68787 | Canola | nucleus | 34.56 | 38.24 |
| Bra011299.1-P | Field mustard | nucleus | 34.28 | 38.17 |
| KRH05350 | Soybean | nucleus | 33.71 | 38.14 |
| Bra003588.1-P | Field mustard | nucleus | 32.01 | 38.05 |
| CDX67971 | Canola | nucleus | 32.01 | 38.05 |
| CDX87347 | Canola | nucleus | 32.29 | 38.0 |
| Bra035148.1-P | Field mustard | nucleus | 32.29 | 38.0 |
| CDX88573 | Canola | nucleus | 32.29 | 37.87 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 33.71 | 37.54 |
| AT4G31800.1 | Thale cress | nucleus | 32.86 | 37.42 |
| CDX79347 | Canola | nucleus | 31.44 | 37.25 |
| KRH09652 | Soybean | nucleus | 34.28 | 36.67 |
| Solyc06g068460.2.1 | Tomato | nucleus | 35.69 | 35.0 |
| PGSC0003DMT400073396 | Potato | nucleus | 35.41 | 34.72 |
| Solyc03g116890.2.1 | Tomato | nucleus | 34.28 | 34.57 |
| KRH52329 | Soybean | nucleus | 29.46 | 33.66 |
| PGSC0003DMT400051047 | Potato | nucleus | 33.71 | 33.52 |
| Bra023983.1-P | Field mustard | nucleus | 32.58 | 33.33 |
| CDY70096 | Canola | nucleus | 32.58 | 33.33 |
| HORVU5Hr1G065420.15 | Barley | nucleus | 32.29 | 29.16 |
| HORVU3Hr1G020210.2 | Barley | nucleus | 22.66 | 15.21 |
| HORVU7Hr1G021260.1 | Barley | nucleus | 24.08 | 13.96 |
| HORVU3Hr1G033740.2 | Barley | nucleus, plastid | 24.36 | 13.67 |
| HORVU6Hr1G079710.2 | Barley | nucleus | 21.53 | 12.26 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | EMBL:AK360269 | ncoils:Coil | UniProt:F2D8Q7 | GO:GO:0002237 |
| GO:GO:0002238 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009414 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009611 | GO:GO:0009617 | GO:GO:0009620 | GO:GO:0009623 | GO:GO:0009628 | GO:GO:0009651 |
| GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009737 | GO:GO:0009739 | GO:GO:0009751 | GO:GO:0009753 |
| GO:GO:0009938 | GO:GO:0009987 | GO:GO:0010200 | GO:GO:0031347 | GO:GO:0043565 | GO:GO:0045892 |
| GO:GO:1990841 | EnsemblPlantsGene:HORVU6Hr1G028790 | EnsemblPlants:HORVU6Hr1G028790.1 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 |
| PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF9 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0000253A6E |
| InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D8Q7]
Coordinates
chrchr6H:+:115444384..115446574
Molecular Weight (calculated)
38619.5 Da
IEP (calculated)
8.162
GRAVY (calculated)
-0.771
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPWMGSQPS LSLDLHVGLP PMGHPHHHQS QYQAPPMIAL AKPKILVEEN FMPLKKDPEV AVLESELQRV SEENRRLGEM LREVASKYEA LQGQFTDMVT
101: AGGNNNHYHN QPSSASEGGS VSPSRKRKSE ESLGTPPPSH TQQQHYAAGL AYAVAPDQAE CTSGEPCKRI REECKPVISK RYVHADPSDL SLVVKDGYQW
201: RKYGQKVTKD NPCPRAYFRC SFAPGCPVKK KVQRSAEDKT ILVATYEGEH NHTQPPPSQP QQQNDGSGAG KNAGNGKPPQ APATPHHPQQ QHKQEAAAVV
301: VSGESAAAAS ELIRRNLAEQ MAMTLTRDPS FKAALVTALS GRILELSPTR DIN
101: AGGNNNHYHN QPSSASEGGS VSPSRKRKSE ESLGTPPPSH TQQQHYAAGL AYAVAPDQAE CTSGEPCKRI REECKPVISK RYVHADPSDL SLVVKDGYQW
201: RKYGQKVTKD NPCPRAYFRC SFAPGCPVKK KVQRSAEDKT ILVATYEGEH NHTQPPPSQP QQQNDGSGAG KNAGNGKPPQ APATPHHPQQ QHKQEAAAVV
301: VSGESAAAAS ELIRRNLAEQ MAMTLTRDPS FKAALVTALS GRILELSPTR DIN
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.