Factsheet for HORVU2Hr1G086240.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G039260.2
HORVU4Hr1G024710.4
HORVU5Hr1G048010.1
HORVU6Hr1G019700.3
HORVU6Hr1G031450.6
HORVU7Hr1G073770.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	HORVU6Hr1G019700.3	AT1G27360.1	21798944
AT2G24050.1	HORVU6Hr1G031450.6	AT1G27360.1	21798944
AT2G24050.1	HORVU4Hr1G024710.4	AT3G08530.1	21798944
AT2G24050.1	HORVU5Hr1G048010.1	AT3G08530.1	21798944
AT2G24050.1	HORVU1Hr1G039260.2	AT5G35620.1	21798944
AT5G57870.1	HORVU7Hr1G073770.1	AT1G72730.1	21798944
AT5G57870.1	HORVU4Hr1G024710.4	AT3G08530.1	21798944
AT5G57870.1	HORVU5Hr1G048010.1	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	96.68	92.39
TraesCS2B01G373600.1	Wheat	cytosol	96.55	92.14
TraesCS2A01G354900.1	Wheat	cytosol	96.41	91.9
EES12452	Sorghum	cytosol	78.22	74.46
Zm00001d003147_P001	Maize	plastid	77.16	73.92
Zm00001d025777_P007	Maize	plastid	76.36	73.25
GSMUA_Achr4P06000_001	Banana	cytosol	3.85	70.73
HORVU6Hr1G023180.1	Barley	cytosol	24.7	63.05
VIT_11s0037g00490.t01	Wine grape	plastid	61.09	57.93
GSMUA_Achr4P05990_001	Banana	cytosol	11.16	57.14
Solyc07g005810.2.1	Tomato	plastid	58.3	56.79
PGSC0003DMT400020464	Potato	cytosol	57.77	56.27
GSMUA_Achr9P22750_001	Banana	plastid	55.51	56.18
Solyc12g009960.1.1	Tomato	nucleus	57.64	56.14
KRH55033	Soybean	endoplasmic reticulum	57.77	56.13
CDY28203	Canola	cytosol	37.98	55.97
CDY69274	Canola	cytosol, mitochondrion	24.3	55.96
PGSC0003DMT400029102	Potato	cytosol, plastid	57.9	55.9
KRH63081	Soybean	endoplasmic reticulum	57.1	55.56
KRH72326	Soybean	endoplasmic reticulum	57.77	55.48
KRH03030	Soybean	endoplasmic reticulum	57.77	55.13
CDY39236	Canola	cytosol	54.05	55.07
GSMUA_AchrUn_...	Banana	cytosol	54.32	54.83
Bra024051.1-P	Field mustard	cytosol	54.32	54.68
CDY28211	Canola	mitochondrion	33.6	53.6
AT5G57870.1	Thale cress	plastid	55.38	53.46
CDX72262	Canola	cytosol	52.86	53.35
CDX68687	Canola	plastid	52.46	52.81
Bra011211.1-P	Field mustard	plastid	52.46	52.74
CDY32742	Canola	plastid	53.39	52.21
Bra020407.1-P	Field mustard	plastid	53.39	52.21
AT2G24050.1	Thale cress	plastid	51.53	51.94
CDY02774	Canola	plastid	52.72	51.42
Bra011218.1-P	Field mustard	plastid	37.18	51.19
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	59.36	50.62
GSMUA_Achr3P28040_001	Banana	cytosol	29.22	48.78
GSMUA_Achr4P05970_001	Banana	cytosol	9.16	45.7
Solyc07g005780.1.1	Tomato	cytosol	24.97	41.78
AT1G62410.1	Thale cress	cytosol	12.09	40.81
AT4G30680.1	Thale cress	mitochondrion, plastid	14.08	40.3
GSMUA_Achr4P12750_001	Banana	cytosol	60.29	39.14
HORVU2Hr1G092940.7	Barley	nucleus	22.97	9.7
HORVU2Hr1G041760.1	Barley	nucleus	23.11	9.53
HORVU2Hr1G041770.2	Barley	nucleus	23.11	9.3

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	UniProt:A0A287IS78	InterPro:ARM-type_fold	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0009615	GO:GO:0009987	GO:GO:0046740	EnsemblPlantsGene:HORVU2Hr1G086240
EnsemblPlants:HORVU2Hr1G086240.1	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3
PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32	SMART:SM00543
SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI000B45FFC3	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr2H:-:621791875..621798089

Molecular Weight (calculated)

83228.6 Da

IEP (calculated)

7.523

GRAVY (calculated)

-0.496

Length

753 amino acids

Sequence
(BLAST)

001: GDFLRPHGGG ASGVSRIGDL HFETRERIRY SRDQLLDLRK ITDISEQILR LQQEIEAELH GDDQSWVRND SNVQLQTQTQ TQVQAQNRFT ETDNRDWRAR
101: TEKPPAPAVQ EEKSWDNIRE VKEQYNASGR QQEQFNRQDQ SSSQKAQAGP PPALIKADVP WSARRGNLSE KDRVLKTVKG ILNKLTPEKF DLLKGQLLDS
201: GITTADILKD VISLIFEKAV FEPTFCPMYA QLCSELNDNL PTFPSEEPGG KEITFKRVLL NNCQEAFEGA DSLRVEIASL TGPDQEMEKR DKERIFKLRT
301: LGNIRLIGEL LKQKMVPEKI VHHIVKELLG SDKKACPDEE HVEAICQFFN TIGKQLDESP KSRRINDTYF VQIRELVANP QLTPRSKFMV RDLIDLRSNN
401: WVPRRAEIKA KTISEIHTEA EKNLGLRPGA TANMRNGRNA PGGPLSPGGF SVNRPGTGGM MPGMPGARKM PGMPGLDNDN WEVQRSRSMP RGDPLRNQGP
501: LINKIPSSIN KPSPINPRLL PQGTGALIGK SALLGTGGPP SRPSTLTASP TPLAAQTTLS PKPSSATPAS VPVPDKAASS AKVVPAGLQK KTASLLEEYF
601: GIRILDEAQQ CIEELQSPDY HPEIVKEAIN LALDKGASFV DPLVKLLEHL YTKKTFKTED LENGCLLYGS LLEDIGIDLP KAPTQFGEVV AHLILSCGLR
701: FEALEGILKA MEDTFFRKAI FNSVTKTLEA NPAGQAILSS HAAVVEACNS LLI

Best Arabidopsis Sequence Match ( AT5G57870.2 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.