Factsheet for HORVU1Hr1G039260.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G042270.1
HORVU2Hr1G086240.1
HORVU3Hr1G047210.1
HORVU4Hr1G090110.2
HORVU5Hr1G001180.1
HORVU6Hr1G000510.1
HORVU6Hr1G023180.1
HORVU6Hr1G033600.1
HORVU7Hr1G006320.4
HORVU7Hr1G050680.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35620.1	HORVU1Hr1G042270.1	AT1G17880.1	15716105
AT5G35620.1	HORVU4Hr1G090110.2	AT1G17880.1	15716105
AT5G35620.1	HORVU3Hr1G047210.1	AT3G45140.1	11117257
AT5G35620.1	HORVU5Hr1G001180.1	AT3G45140.1	11117257
AT5G35620.1	HORVU6Hr1G000510.1	AT3G45140.1	11117257
AT5G35620.1	HORVU6Hr1G033600.1	AT3G45140.1	11117257
AT5G35620.1	HORVU7Hr1G006320.4	AT3G45140.1	11117257
AT5G35620.1	HORVU7Hr1G050680.1	AT3G45140.1	11117257
AT5G35620.1	HORVU2Hr1G086240.1	AT5G57870.1	21798944
AT5G35620.1	HORVU6Hr1G023180.1	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G146500.1	Wheat	golgi	91.43	91.87
TraesCS1A01G149200.1	Wheat	cytosol	92.38	91.08
TraesCS1B01G167100.1	Wheat	cytosol	87.62	88.04
EER94108	Sorghum	cytosol	75.71	75.71
Os10t0467600-01	Rice	cytosol, plastid	72.86	74.27
Zm00001d032775_P002	Maize	cytosol, extracellular	72.86	72.86
GSMUA_Achr4P25000_001	Banana	cytosol	65.24	71.35
Zm00001d014065_P001	Maize	cytosol, extracellular	73.33	71.3
VIT_05s0049g01770.t01	Wine grape	cytosol	67.62	69.61
KRG90357	Soybean	endoplasmic reticulum	65.24	68.5
PGSC0003DMT400044186	Potato	cytosol	63.81	67.0
GSMUA_Achr5P12940_001	Banana	cytosol	65.71	66.03
Solyc09g090580.2.1	Tomato	nucleus	62.38	65.5
KRH33614	Soybean	cytosol	63.81	65.37
CDY38545	Canola	cytosol	58.1	61.62
Bra039484.1-P	Field mustard	cytosol	58.1	61.62
Bra035393.1-P	Field mustard	cytosol	58.1	61.31
AT5G35620.1	Thale cress	cytosol	57.62	61.11
CDY33686	Canola	cytosol	57.14	60.3
CDY06456	Canola	cytosol	54.29	58.76
CDY49364	Canola	cytosol	54.76	57.5
Bra035531.1-P	Field mustard	cytosol	54.76	57.5
CDX84118	Canola	cytosol	54.29	57.0
CDX74645	Canola	cytosol	57.62	53.07
HORVU3Hr1G113940.2	Barley	cytosol	45.71	44.65
HORVU4Hr1G061500.4	Barley	cytosol	28.1	25.43
HORVU2Hr1G094490.1	Barley	plastid	18.1	23.17

Protein Annotations

MapMan:17.4.2.4.1	Gene3D:3.30.760.10	EMBL:AK360008	EMBL:AK361134	UniProt:F2D7Z6	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006412	GO:GO:0006413
GO:GO:0006950	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605
GO:GO:0009607	GO:GO:0009615	GO:GO:0009987	GO:GO:0019538	GO:GO:0050687	EnsemblPlantsGene:HORVU1Hr1G039260
EnsemblPlants:HORVU1Hr1G039260.2	InterPro:IPR023398	PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF12
SUPFAM:SSF55418	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI00020059E0	SEG:seg

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D7Z6]

Coordinates

chrchr1H:-:275290251..275294068

Molecular Weight (calculated)

23612.6 Da

IEP (calculated)

5.145

GRAVY (calculated)

-0.555

Length

210 amino acids

Sequence
(BLAST)

001: MAEVEAALPV AATTETPDVA AESDAGAADA KAPHKLQRQW TFWYDIQSKP KPGAAWGTSL KKGYTFDTVE EFWCLYDQIF RPSKLVGSAD FHLFKAGVEP
101: KWEDPECANG GKWTVISSRK ANLDTMWLET CMALIGEQFD ESQEICGVVS SVRQRQDKLS LWTKTASNEA VQVDIGKKWK EVIDYNDKMV YSFHDDSRSQ
201: KPSRGGRYTV

Best Arabidopsis Sequence Match ( AT5G35620.3 )
(BLAST)

001: MATDDVNEPL PAAAELPATE AEKQPHKLER KWSFWFDNQS KKGAAWGASL RKAYTFDTVE DFWGLHETIF QTSKLTANAE IHLFKAGVEP KWEDPECANG
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV

Arabidopsis Description

EIF(ISO)4ELSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UEE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.