Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G039260.2 | |
| HORVU2Hr1G094490.1 | |
| HORVU4Hr1G061500.4 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G45140.1 | HORVU2Hr1G094490.1 | AT5G18110.1 | 11117257 |
| AT3G45140.1 | HORVU4Hr1G061500.4 | AT5G18110.1 | 11117257 |
| AT3G45140.1 | HORVU1Hr1G039260.2 | AT5G35620.1 | 11117257 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0559934-00 | Rice | cytosol | 62.67 | 69.74 |
| VIT_13s0064g01490.t01 | Wine grape | cytosol | 66.36 | 36.09 |
| TraesCS6B01G014400.1 | Wheat | cytosol | 90.78 | 32.78 |
| CDY61034 | Canola | cytosol | 58.06 | 28.19 |
| Solyc01g009680.2.1 | Tomato | plastid | 53.92 | 26.41 |
| VIT_06s0004g01460.t01 | Wine grape | plastid | 63.13 | 22.91 |
| TraesCS6D01G010100.1 | Wheat | plastid | 93.55 | 21.62 |
| CDY07409 | Canola | cytosol | 34.56 | 19.38 |
| PGSC0003DMT400020118 | Potato | cytosol | 61.29 | 19.19 |
| HORVU7Hr1G050680.1 | Barley | peroxisome | 58.99 | 18.71 |
| HORVU6Hr1G000510.1 | Barley | plastid | 77.42 | 18.03 |
| CDY16339 | Canola | plastid | 62.67 | 17.87 |
| Os12t0559200-01 | Rice | plastid | 74.65 | 17.57 |
| HORVU5Hr1G001180.1 | Barley | plastid | 73.27 | 17.08 |
| VIT_06s0004g01500.t01 | Wine grape | cytosol | 62.21 | 17.07 |
| VIT_06s0004g01480.t01 | Wine grape | cytosol | 61.29 | 16.77 |
| HORVU7Hr1G006320.4 | Barley | plastid | 70.97 | 16.61 |
| VIT_06s0004g01450.t01 | Wine grape | cytosol, extracellular | 64.06 | 16.18 |
| VIT_13s0064g01480.t01 | Wine grape | plastid | 66.82 | 16.06 |
| Solyc01g006560.2.1 | Tomato | plastid | 65.9 | 15.85 |
| Bra004059.1-P | Field mustard | plastid | 63.13 | 15.82 |
| CDY04196 | Canola | plastid | 64.52 | 15.75 |
| Solyc01g006540.2.1 | Tomato | plastid | 64.98 | 15.74 |
| PGSC0003DMT400081909 | Potato | plastid | 64.52 | 15.57 |
| VIT_06s0004g01510.t01 | Wine grape | plastid | 64.52 | 15.54 |
| KRH29669 | Soybean | plastid | 64.52 | 15.54 |
| HORVU6Hr1G033600.1 | Barley | plastid | 64.06 | 15.51 |
| CDY61881 | Canola | cytosol | 25.35 | 15.49 |
| KRH17965 | Soybean | plastid | 65.44 | 15.47 |
| KRH29668 | Soybean | nucleus | 64.52 | 15.45 |
| CDY61036 | Canola | plastid | 63.13 | 15.41 |
| Bra004057.1-P | Field mustard | cytosol | 62.67 | 15.26 |
| Bra004060.1-P | Field mustard | plastid | 63.13 | 15.24 |
| KRH24671 | Soybean | cytosol, plastid | 64.06 | 15.21 |
| CDX67920 | Canola | plastid | 63.13 | 15.15 |
| CDX79416 | Canola | plastid | 63.13 | 15.15 |
| Solyc12g011040.1.1 | Tomato | nucleus, plastid | 62.21 | 15.13 |
| Bra003526.1-P | Field mustard | plastid | 62.67 | 15.04 |
| KRG89883 | Soybean | cytosol, plastid | 59.45 | 15.02 |
| CDX91565 | Canola | plastid | 62.21 | 15.0 |
| KRH18682 | Soybean | cytosol, mitochondrion | 62.67 | 14.93 |
| CDY61880 | Canola | plastid | 37.79 | 14.88 |
| AT3G45140.1 | Thale cress | plastid | 61.29 | 14.84 |
| KRG89889 | Soybean | cytosol, plastid | 58.06 | 14.65 |
| VIT_06s0004g01470.t01 | Wine grape | cytosol | 60.83 | 14.62 |
| KRG89888 | Soybean | nucleus | 59.45 | 14.29 |
| Bra004058.1-P | Field mustard | plastid | 61.29 | 12.57 |
| HORVU4Hr1G076570.6 | Barley | cytosol, plastid | 53.0 | 12.55 |
| CDY07407 | Canola | cytosol, plastid | 63.13 | 12.49 |
| HORVU5Hr1G055110.2 | Barley | mitochondrion | 20.28 | 12.46 |
| HORVU5Hr1G054200.1 | Barley | cytosol, mitochondrion | 27.65 | 12.3 |
| HORVU5Hr1G093770.1 | Barley | cytosol | 48.85 | 12.28 |
| CDY72550 | Canola | cytosol | 17.51 | 11.84 |
| HORVU1Hr1G054390.4 | Barley | cytosol | 45.16 | 11.61 |
| HORVU5Hr1G093700.3 | Barley | cytosol, plasma membrane | 43.78 | 11.0 |
| HORVU2Hr1G115980.2 | Barley | plastid | 44.24 | 10.88 |
| HORVU5Hr1G117110.1 | Barley | cytosol | 44.24 | 10.82 |
| HORVU4Hr1G005920.1 | Barley | cytosol, plasma membrane | 43.32 | 10.71 |
| HORVU2Hr1G115960.1 | Barley | plastid | 44.7 | 10.49 |
| Bra022535.1-P | Field mustard | plastid | 37.79 | 10.11 |
| CDY07408 | Canola | plastid | 11.52 | 5.46 |
| CDY70245 | Canola | plastid | 10.6 | 5.02 |
| CDY61882 | Canola | plastid | 0.46 | 0.26 |
| CDY70606 | Canola | plastid | 0.46 | 0.25 |
| Os12t0560200-00 | Rice | cytosol | 0.0 | 0.0 |
| CDY70843 | Canola | cytosol | 0.0 | 0.0 |
| VIT_13s0064g01500.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.245.10 | Gene3D:3.10.450.60 | MapMan:50.1.12 | UniProt:A0A287KYK0 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0016702 | GO:GO:0046872 |
| GO:GO:0051213 | GO:GO:0055114 | EnsemblPlantsGene:HORVU3Hr1G047210 | EnsemblPlants:HORVU3Hr1G047210.1 | InterPro:IPR013819 | InterPro:LipOase |
| InterPro:LipOase_C | InterPro:LipOase_C_sf | InterPro:LipOase_Fe_BS | InterPro:LipOase_plant | PFAM:PF00305 | PRINTS:PR00087 |
| PRINTS:PR00468 | ScanProsite:PS00711 | PFscan:PS51393 | PANTHER:PTHR11771 | PANTHER:PTHR11771:SF89 | SUPFAM:SSF48484 |
| UniParc:UPI000B46CF0F | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:320757769..320758687
Molecular Weight (calculated)
24586.6 Da
IEP (calculated)
6.960
GRAVY (calculated)
-0.143
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MQELPLVSKL DEQTYGPTDS LITKEFIEEQ INGVMTAEEA VAKKKLFMLD YHDLYLPFVN KVRQLEGTTL YGARALFFLA GDGTLRPIAI ELTRPKSASK
101: PQWREVFTPA SAHEASITGS WQRQLAKAHV VSLDTGYHQL VTHWLRTHCC VEPYIIVANR QLSQMHPIYR LLHPSFRFTM EINAQARSLL INADGIIEST
201: FLPGKYSMEI SSAAYAE
101: PQWREVFTPA SAHEASITGS WQRQLAKAHV VSLDTGYHQL VTHWLRTHCC VEPYIIVANR QLSQMHPIYR LLHPSFRFTM EINAQARSLL INADGIIEST
201: FLPGKYSMEI SSAAYAE
001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
Arabidopsis Description
LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.