Factsheet for PGSC0003DMT400020118

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400044186
PGSC0003DMT400060836

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	PGSC0003DMT400060836	AT5G18110.1	11117257
AT3G45140.1	PGSC0003DMT400044186	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g011040.1.1	Tomato	nucleus, plastid	92.93	72.2
Os12t0559934-00	Rice	cytosol	19.05	67.69
CDY72550	Canola	cytosol	29.73	64.17
CDY61034	Canola	cytosol	41.27	63.98
CDY07409	Canola	cytosol	35.64	63.82
PGSC0003DMT400081909	Potato	plastid	82.54	63.63
HORVU3Hr1G047210.1	Barley	cytosol	19.19	61.29
VIT_06s0004g01460.t01	Wine grape	plastid	51.95	60.2
CDY70843	Canola	cytosol	10.82	59.52
VIT_06s0004g01500.t01	Wine grape	cytosol	67.24	58.91
VIT_06s0004g01480.t01	Wine grape	cytosol	66.38	58.01
CDY61881	Canola	cytosol	29.44	57.46
PGSC0003DMT400034472	Potato	cytosol	35.93	55.7
KRG89883	Soybean	cytosol, plastid	64.5	52.04
VIT_06s0004g01510.t01	Wine grape	plastid	67.53	51.94
KRH29668	Soybean	nucleus	67.24	51.43
KRH24671	Soybean	cytosol, plastid	67.82	51.42
KRH29669	Soybean	plastid	66.81	51.39
HORVU7Hr1G050680.1	Barley	peroxisome	50.07	50.73
KRG89889	Soybean	cytosol, plastid	62.48	50.35
VIT_06s0004g01470.t01	Wine grape	cytosol	64.94	49.83
TraesCS7D01G029400.1	Wheat	cytosol	19.05	49.81
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	60.89	49.13
KRG89888	Soybean	nucleus	63.35	48.62
KRH18682	Soybean	cytosol, mitochondrion	63.78	48.52
KRH17965	Soybean	plastid	63.64	48.04
GSMUA_Achr3P11780_001	Banana	plastid	58.3	47.75
CDX67920	Canola	plastid	61.9	47.46
TraesCS6B01G014400.1	Wheat	cytosol	41.13	47.42
CDX79416	Canola	plastid	61.76	47.35
Bra003526.1-P	Field mustard	plastid	61.76	47.35
AT3G45140.1	Thale cress	plastid	60.89	47.1
GSMUA_Achr9P12470_001	Banana	plastid	57.29	47.09
CDY04196	Canola	plastid	59.31	46.23
CDX91565	Canola	plastid	60.03	46.22
OQU80925	Sorghum	cytosol	57.43	46.01
Zm00001d053675_P001	Maize	plastid	60.03	45.97
TraesCS7A01G034900.1	Wheat	mitochondrion	19.34	45.73
Bra004057.1-P	Field mustard	cytosol	58.59	45.57
HORVU6Hr1G033600.1	Barley	plastid	58.87	45.54
PGSC0003DMT400074322	Potato	cytosol	29.0	45.48
PGSC0003DMT400063654	Potato	cytosol	32.18	45.42
TraesCS6B01G193400.1	Wheat	plastid	58.73	45.17
TraesCS6D01G154600.1	Wheat	plastid	58.44	44.95
Bra004059.1-P	Field mustard	plastid	56.13	44.92
Bra004060.1-P	Field mustard	plastid	58.15	44.83
CDY61036	Canola	plastid	57.43	44.77
TraesCS6A01G166000.1	Wheat	golgi	58.15	44.73
KXG29701	Sorghum	plastid	58.73	44.38
Os02t0194700-01	Rice	plasma membrane	59.02	44.17
Zm00001d015852_P004	Maize	plastid	58.01	44.13
Bra022535.1-P	Field mustard	plastid	51.37	43.9
TraesCS4D01G347300.1	Wheat	cytosol	55.56	43.5
CDY16339	Canola	plastid	47.76	43.5
Os08t0508800-01	Rice	nucleus, plasma membrane	57.0	42.75
TraesCS7B01G145200.1	Wheat	plastid	56.85	42.46
TraesCS7D01G244800.1	Wheat	plastid	57.0	42.38
TraesCS7A01G246200.1	Wheat	plastid	56.71	42.21
Os08t0509100-01	Rice	nucleus	56.57	41.66
TraesCS5D01G013400.1	Wheat	plastid	55.27	41.27
TraesCS5B01G006500.1	Wheat	plastid	55.27	41.27
TraesCS5A01G007900.1	Wheat	plastid	55.12	41.16
HORVU5Hr1G001180.1	Barley	plastid	55.27	41.14
Zm00001d031449_P001	Maize	mitochondrion	56.57	41.0
Os12t0559200-01	Rice	plastid	54.4	40.89
HORVU7Hr1G006320.4	Barley	plastid	54.4	40.67
PGSC0003DMT400045047	Potato	cytosol, plastid	52.81	40.22
HORVU6Hr1G000510.1	Barley	plastid	53.54	39.81
TraesCS6D01G010100.1	Wheat	plastid	52.38	38.66
Bra004058.1-P	Field mustard	plastid	58.87	38.56
Os12t0560200-00	Rice	cytosol	5.48	38.38
TraesCS5B01G033000.1	Wheat	plastid	52.38	38.21
PGSC0003DMT400058933	Potato	plastid	50.22	38.07
PGSC0003DMT400054145	Potato	cytosol	46.9	37.88
TraesCS5D01G041100.1	Wheat	plastid	51.37	37.67
CDY07407	Canola	cytosol, plastid	59.31	37.47
PGSC0003DMT400028158	Potato	cytosol	46.32	37.24
PGSC0003DMT400063477	Potato	cytosol	45.45	36.8
PGSC0003DMT400063469	Potato	cytosol	44.59	36.65
PGSC0003DMT400063446	Potato	cytosol	41.7	35.95
PGSC0003DMT400081370	Potato	cytosol	44.88	35.46
TraesCS5A01G032800.1	Wheat	mitochondrion	43.15	34.81
PGSC0003DMT400063452	Potato	cytosol	40.12	34.79
PGSC0003DMT400063461	Potato	cytosol	34.34	34.29
CDY61880	Canola	plastid	27.13	34.12
CDY70245	Canola	plastid	18.47	27.95
CDY07408	Canola	plastid	18.04	27.29
CDY70606	Canola	plastid	14.72	25.82
CDY61882	Canola	plastid	12.27	21.96
PGSC0003DMT400074324	Potato	cytosol	9.24	18.5

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:3.10.450.60	Gene3D:4.10.375.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR013819	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	UniProt:M1AD08	PFAM:PF00305	EnsemblPlantsGene:PGSC0003DMG400007793	PGSC:PGSC0003DMG400007793
EnsemblPlants:PGSC0003DMT400020118	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SUPFAM:SSF48484	UniParc:UPI000296C309	SEG:seg	:

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400007793]

Coordinates

chr12:+:1286913..1293220

Molecular Weight (calculated)

78928.8 Da

IEP (calculated)

6.118

GRAVY (calculated)

-0.430

Length

693 amino acids

Sequence
(BLAST)

001: MRLQSYIPSQ TPSGVKRLRE RELVTLRGDG FGERKKYERI YDYDVYNDIG DPDGNDNGKR PVLGGKQLPY PRRCRTGRSR SKKDPLSELK SDFVYVPRDE
101: EFSEVKSSTF SGNPIYSVLQ AIVPALETIV SNPDLDFPQF PSIGSLFNVG IDVSRQGNKK NGMFNVVPRL IKAISDTETP QSLQRDKFSW LGDVEFARQT
201: LSGFNPYSIR LVTEWPLKSK LSPEVYGPPE SAMTKELIEL EIGGSMAVEE AVQQKKLFIL DYHDLLLPYV NKVNELKRTI LYGSRTLFFL THEGTLRPLA
301: IELTRPPIDN KPQWKQAYFP STWNATGAWL WKLAKAHVLA HDSGYHQLVS HWLRTHCATE PYIIATNRQL SAMHPIYRLL HPHFRHTTKI NSLAREALIN
401: ANGIIETSFS LGKYAMEFSS VAYDLEWRFD QEALPQNLIS RGLAVEDPNE PYGLKLTIQD YPFANDGLVL WDTLKQWVTN YVNHYYPQTN LIESDKEIQA
501: WWSEIKNVGH GDKKNEPWWP ELKTPNDLIG IITTMIWVTS GHHAAVNFGQ YIYAGYFPNR PTIARTKMPT EDPTNEEWES FLNKPEEALL KCLPSQLQAT
601: KLIAIMDVLS NHAPDEEYIG EIIEPYWAED PVINAAFEVF SGELKELEGI IDARNVDSKL VNRNGAGVIP YELLKPFSEP GVTGKGVPYS ISI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.