Factsheet for PGSC0003DMT400081370

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g075860.2.1	Tomato	cytosol, nucleus	96.35	96.35
KRH35534	Soybean	cytosol	38.2	74.78
KRG91271	Soybean	cytosol	69.67	71.21
PGSC0003DMT400028158	Potato	cytosol	69.44	70.65
VIT_05s0020g03170.t01	Wine grape	cytosol	69.78	69.86
PGSC0003DMT400063654	Potato	cytosol	38.31	68.43
GSMUA_Achr1P22970_001	Banana	cytosol	65.79	68.2
PGSC0003DMT400054145	Potato	cytosol	66.36	67.83
KRG88464	Soybean	cytosol	34.55	66.45
AT3G22400.1	Thale cress	cytosol	66.59	65.91
Bra039948.1-P	Field mustard	cytosol	66.59	65.84
TraesCS4A01G275800.1	Wheat	cytosol	17.9	65.69
CDY38326	Canola	cytosol	66.25	65.5
PGSC0003DMT400063461	Potato	cytosol	51.65	65.27
CDY46325	Canola	cytosol	65.56	65.19
PGSC0003DMT400063446	Potato	cytosol	59.64	65.05
Bra023829.1-P	Field mustard	cytosol	66.48	64.56
CDY64191	Canola	cytosol	66.25	64.06
PGSC0003DMT400063452	Potato	cytosol	58.15	63.83
PGSC0003DMT400063477	Potato	cytosol	62.26	63.78
PGSC0003DMT400063469	Potato	cytosol	61.23	63.7
TraesCS6D01G122000.1	Wheat	cytosol	22.35	63.23
GSMUA_AchrUn_...	Banana	cytosol	61.57	63.16
GSMUA_AchrUn_...	Banana	cytosol	55.42	61.99
GSMUA_Achr1P24370_001	Banana	cytosol	59.64	61.75
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	60.78	60.78
TraesCS4A01G359800.1	Wheat	cytosol	36.72	60.64
EER93612	Sorghum	cytosol	58.61	59.35
Zm00001d033623_P003	Maize	cytosol	58.49	59.17
TraesCS4B01G037800.1	Wheat	cytosol	59.18	59.11
TraesCS4A01G275900.1	Wheat	cytosol, unclear	59.18	59.11
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	59.06	59.0
Os03t0700400-00	Rice	cytosol, plasma membrane	8.44	58.73
TraesCS4D01G035100.1	Wheat	cytosol	58.72	58.66
Os03t0699700-01	Rice	cytosol, plastid	57.7	58.63
TraesCS4D01G035200.1	Wheat	cytosol	55.3	58.5
GSMUA_Achr9P19250_001	Banana	plasma membrane	63.28	58.36
GSMUA_Achr6P25110_001	Banana	cytosol	52.79	58.31
EER93611	Sorghum	cytosol	58.95	58.22
TraesCS5A01G378800.2	Wheat	cytosol	51.54	58.1
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	57.01	58.07
GSMUA_Achr6P25090_001	Banana	cytosol	55.42	58.0
TraesCS4B01G037700.3	Wheat	cytosol, golgi	56.9	57.96
Zm00001d033624_P001	Maize	cytosol	58.38	57.72
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	58.38	57.72
KXG37783	Sorghum	cytosol	58.49	57.45
TraesCS6B01G160400.1	Wheat	mitochondrion	56.9	57.16
EES04025	Sorghum	cytosol	56.56	57.14
TraesCS5B01G382400.1	Wheat	cytosol, golgi	55.53	56.89
TraesCS6A01G132500.1	Wheat	mitochondrion	56.56	56.82
TraesCS6A01G132200.1	Wheat	mitochondrion	56.56	56.82
TraesCS5A01G378700.1	Wheat	cytosol	55.87	56.71
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	55.87	56.71
TraesCS3B01G602500.1	Wheat	cytosol	56.9	56.64
TraesCS5B01G382300.1	Wheat	cytosol, unclear	55.76	56.6
Os03t0738600-01	Rice	plasma membrane, plastid	56.1	56.55
HORVU5Hr1G093770.1	Barley	cytosol	55.42	56.32
EES04028	Sorghum	cytosol	55.87	56.13
TraesCS3B01G605700.1	Wheat	cytosol	56.56	56.05
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	55.19	56.02
Zm00001d042541_P002	Maize	cytosol	56.21	55.77
TraesCS5B01G382600.1	Wheat	cytosol	54.73	55.75
TraesCS5A01G378900.1	Wheat	cytosol	54.39	55.21
Zm00001d042540_P008	Maize	cytosol	55.53	54.6
TraesCS5D01G513100.1	Wheat	cytosol	53.36	53.92
TraesCS5D01G388800.1	Wheat	cytosol	54.85	53.62
GSMUA_Achr6P25080_001	Banana	cytosol	47.09	53.29
TraesCS5A01G379000.1	Wheat	nucleus, unclear	46.64	53.12
Os11t0575600-01	Rice	mitochondrion	52.45	53.0
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	29.19	52.46
HORVU5Hr1G117110.1	Barley	cytosol	52.79	52.2
PGSC0003DMT400074322	Potato	cytosol	26.0	51.58
TraesCS6D01G121900.1	Wheat	mitochondrion	25.31	49.66
TraesCS6B01G395700.1	Wheat	cytosol	45.95	49.63
PGSC0003DMT400034472	Potato	cytosol	23.95	46.98
PGSC0003DMT400020118	Potato	cytosol	35.46	44.88
PGSC0003DMT400058933	Potato	plastid	42.87	41.14
PGSC0003DMT400081909	Potato	plastid	41.51	40.49
PGSC0003DMT400045047	Potato	cytosol, plastid	40.48	39.01
PGSC0003DMT400074324	Potato	cytosol	12.54	31.79
GSMUA_Achr6P25100_001	Banana	cytosol	45.72	3.34

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:102593728	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
MapMan:50.1.12	ProteinID:AAD09202	ProteinID:AAD09202.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M1D4M7
PFAM:PF00305	PFAM:PF01477	EnsemblPlantsGene:PGSC0003DMG400031809	PGSC:PGSC0003DMG400031809	EnsemblPlants:PGSC0003DMT400081370	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF53	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
EMBL:U24232	UniParc:UPI000296BF2E	RefSeq:XP_006359918.1	RefSeq:XP_006359919.1	RefSeq:XP_006359920.1	RefSeq:XP_006359921.1
SEG:seg	:	:	:	:	:

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400031809]

Coordinates

chr9:+:53384247..53389353

Molecular Weight (calculated)

99742.8 Da

IEP (calculated)

5.934

GRAVY (calculated)

-0.354

Length

877 amino acids

Sequence
(BLAST)

001: MLEKWLGVVC GKNNIDTIDE NNCNNIHING KKVRGTVVLM KKNVLDLTDV GASLLDRFHE VIGKGVSLQL ISADHAEPGN GCTGKLGKPA FLEKWISTLT
101: SISAGDATFN VTFDWDESMG VPGAFIIKNY HHSQFYLRTV VLEDVPGHGE LHFVCNSWVY PAHRYKYDRV FFANKTYLPC NTPEPLRPYR EQELLSLRGS
201: GSGKLKEWDR VYDYAFYNDL GFPDKGPDYV RPVLGGSKEY PYPRRGRTSR RATKTDPMSE SRLPPLGLDI YVPRDERFTP VKLSDFLAYA VKSLGQVLIP
301: EIVALFDKTI NEFDSFEDVL KLYEGGIKLP DHHLKKLRQC IPWEMLKELV RSDGEPFLKF PMPDVIKVDR SAWRTDEEFG REMLAGVNPV IIRRLQEFPP
401: ASKLDPEVYG NQTSSIKREH IDKNMDGLTV DEAIECNRLF ILDHHDSLLP YLRRINTTKT KTYASRTLLF LQDNGTLRPL AIELSLPHPQ GDKHGATSLV
501: FTPADEGVEG TVWQLAKAYA AVNDSGYHQL ISHWLNTHAT IEPFVIATNR HLSVLHPIFK LLQPHFRDTM YINALARQIL INAGGILELT VFPGKYAMEM
601: SSIVYKNWVF TEQGLPADLL KRGVAVLDSS QPYGLKLLIE DYPFAVDGLE VWAAIEAWVD DYCSFYYSTD DMIRDDTELQ SWWMEVRNEG HGDLKDEPWW
701: PQMQTRAELV EACTIIIWVA SALHAAVNFG QYPYAGYLPN RPTVSRRFMP EPGTPEYAEL ESNPDVAYLK TITAQFQTLL GVSLIEILSR HASDEIYLGQ
801: RENPEWTSDV EPRQSFQRFH DRLVDVENRI VERNNDSRWK NRNGPVKVPY MLLYPNASGD NSESGLTGKG IPNSVSI

Best Arabidopsis Sequence Match ( AT3G22400.1 )
(BLAST)

001: MIHTDIAEIL CVKPKTTKKT KTMEEDVKKT TTMKIEGEVV VMKKNLLDFK DVMASLLDRV NELLGRRVSL HLISSHQPDP ANEKRGRLGK AAHLEKWVTK
101: IKTSVTAEET AFGVTFDWDE SMGPPAAFVI KNHHHSQFYL KSLTLRGFPD GEGGATAIHF ICNSWIYPNH RYRSDRVFFS NKAYLPSETP ELIKELREEE
201: LKNLRGNEKG GEFKEWDRVY DYAYYNDLGA PDKGPDSVRP VLGGSPELPY PRRGKTGRKS TKSDPKSESR LALLNLNIYV PRDERFSHVK FSDFLAYALK
301: SVTQVLVPEI ASVCDKTINE FDSFEDVFHL YDGSIKLANG HTISKLRDVI PWEMFRELVR NDGERFLKYP LPDILKESRS AWRTDEEFAR EMLAGLNPVV
401: ISRLQEFPPK SCLDSAKYGN QHSSIRTEHI ESNMNGLNVQ EALEQNKLYI LDHHDALMPY LTRINSTNTK TYATRTLLLL QADGTLKPLA IELSLPHAQG
501: ESYGSVSKVF TPAEKGVEGS VWQLAKAYAA VNDSGYHQLI SHWLQTHAVI EPFIIASNRQ LSVVHPIHKL LHPHFRDTMN INALARHVLI NSDGVLERTV
601: FPSRYAMEMS SSIYKNWVFT EQALPKDLLK RGVAVEDPNS DNGVKLLIED YPFAVDGLEI WSAIKTWVTE YCTFYYNNDK TVQTDTEIQS WWTELRTKGH
701: GDKRHESWWP SMQTRDDLIE TCTIIIWIAS ALHAAVNFGQ YPYAGFLPNR PTVSRRFMPE PGTDEYAELE EDADVAFLKT ITPQLQTLLG ISIIEILSMH
801: STDEIYLGQR DSPNWTADDE PLEAFKRFGK ELELIENNII RRNNDKRFKN RTGPVNIPYT LLYPNTTDYT REGGITGKGI PNSVSI

Arabidopsis Description

LOX5Linoleate 9S-lipoxygenase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.