Factsheet for PGSC0003DMT400063654

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70916	Canola	cytosol	67.41	65.67
TraesCS4A01G275800.1	Wheat	cytosol	28.72	59.0
TraesCS6D01G122000.1	Wheat	cytosol	36.25	57.42
TraesCS4A01G359800.1	Wheat	cytosol	60.08	55.56
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	91.85	52.56
PGSC0003DMT400074322	Potato	cytosol	45.01	50.0
PGSC0003DMT400063446	Potato	cytosol	80.04	48.88
PGSC0003DMT400034472	Potato	cytosol	43.38	47.65
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	46.64	46.93
PGSC0003DMT400028158	Potato	cytosol	79.63	45.36
PGSC0003DMT400063452	Potato	cytosol	71.69	44.06
PGSC0003DMT400054145	Potato	cytosol	75.76	43.36
PGSC0003DMT400063469	Potato	cytosol	72.1	41.99
VIT_14s0128g00780.t01	Wine grape	cytosol	73.32	41.91
VIT_14s0128g00790.t01	Wine grape	cytosol	73.32	41.43
KRH68548	Soybean	cytosol	69.65	39.86
KRH33939	Soybean	cytosol, endoplasmic reticulum	68.43	38.84
Bra021322.1-P	Field mustard	cytosol	67.62	38.74
GSMUA_AchrUn_...	Banana	cytosol	61.51	38.52
PGSC0003DMT400063477	Potato	cytosol	67.01	38.43
PGSC0003DMT400081370	Potato	cytosol	68.43	38.31
PGSC0003DMT400063461	Potato	cytosol	53.97	38.18
AT1G55020.1	Thale cress	cytosol	66.6	38.07
TraesCS5A01G379000.1	Wheat	nucleus, unclear	59.67	38.05
GSMUA_Achr1P24370_001	Banana	cytosol	65.38	37.9
GSMUA_AchrUn_...	Banana	cytosol	65.99	37.89
TraesCS5A01G378800.2	Wheat	cytosol	59.67	37.66
GSMUA_Achr1P22970_001	Banana	cytosol	63.95	37.12
GSMUA_Achr6P25110_001	Banana	cytosol	58.86	36.4
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	64.97	36.37
EER93611	Sorghum	cytosol	65.58	36.26
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	64.15	35.51
Os03t0699700-01	Rice	cytosol, plastid	62.32	35.46
TraesCS4D01G035100.1	Wheat	cytosol	63.14	35.31
TraesCS4A01G275900.1	Wheat	cytosol, unclear	63.14	35.31
EER93612	Sorghum	cytosol	62.12	35.22
Zm00001d033624_P001	Maize	cytosol	63.54	35.17
TraesCS4B01G037800.1	Wheat	cytosol	62.73	35.08
GSMUA_Achr6P25090_001	Banana	cytosol	59.67	34.96
GSMUA_Achr9P19250_001	Banana	plasma membrane	67.62	34.91
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	62.32	34.85
Zm00001d033623_P003	Maize	cytosol	61.3	34.72
TraesCS3B01G602500.1	Wheat	cytosol	61.71	34.39
TraesCS5B01G382600.1	Wheat	cytosol	60.29	34.38
TraesCS6A01G132500.1	Wheat	mitochondrion	61.1	34.36
TraesCS6A01G132200.1	Wheat	mitochondrion	61.1	34.36
TraesCS5D01G513100.1	Wheat	cytosol	60.69	34.33
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	60.29	34.26
Os03t0738600-01	Rice	plasma membrane, plastid	60.69	34.25
TraesCS6B01G160400.1	Wheat	mitochondrion	60.9	34.25
TraesCS3B01G605700.1	Wheat	cytosol	61.71	34.24
TraesCS5B01G382400.1	Wheat	cytosol, golgi	59.67	34.23
HORVU5Hr1G093770.1	Barley	cytosol	60.08	34.18
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	60.08	34.14
TraesCS5B01G382300.1	Wheat	cytosol, unclear	60.08	34.14
KXG37783	Sorghum	cytosol	61.91	34.04
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	59.47	33.91
TraesCS5A01G378700.1	Wheat	cytosol	59.67	33.91
TraesCS5A01G378900.1	Wheat	cytosol	59.67	33.91
EES04025	Sorghum	cytosol	59.88	33.87
TraesCS4B01G037700.3	Wheat	cytosol, golgi	58.66	33.45
HORVU5Hr1G117110.1	Barley	cytosol	60.29	33.37
EES04028	Sorghum	cytosol	59.06	33.22
Zm00001d042541_P002	Maize	cytosol	59.27	32.92
TraesCS4D01G035200.1	Wheat	cytosol	55.4	32.81
TraesCS5D01G388800.1	Wheat	cytosol	59.88	32.78
Os11t0575600-01	Rice	mitochondrion	57.84	32.72
Zm00001d042540_P008	Maize	cytosol	59.06	32.51
PGSC0003DMT400020118	Potato	cytosol	45.42	32.18
TraesCS6B01G395700.1	Wheat	cytosol	46.64	28.2
CDY43490	Canola	cytosol, plasma membrane	67.41	27.51
GSMUA_Achr6P25080_001	Banana	cytosol	41.75	26.45
PGSC0003DMT400058933	Potato	plastid	48.68	26.15
PGSC0003DMT400045047	Potato	cytosol, plastid	48.27	26.04
PGSC0003DMT400081909	Potato	plastid	46.84	25.58
VIT_06s0004g01580.t01	Wine grape	cytosol	16.5	24.18
TraesCS6D01G121900.1	Wheat	mitochondrion	9.16	10.07
GSMUA_Achr6P25100_001	Banana	cytosol	42.16	1.72
PGSC0003DMT400074324	Potato	cytosol	0.81	1.16
Os03t0700400-00	Rice	cytosol, plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.20.245.10	Gene3D:3.10.450.60	MapMan:50.1.12	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR013819	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	UniProt:M1CAZ1	PFAM:PF00305	EnsemblPlantsGene:PGSC0003DMG400024741	PGSC:PGSC0003DMG400024741	EnsemblPlants:PGSC0003DMT400063654
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF91	SUPFAM:SSF48484	UniParc:UPI000296E96A	:	:	:

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400024741]

Coordinates

chr1:-:76982872..76987025

Molecular Weight (calculated)

55927.2 Da

IEP (calculated)

6.461

GRAVY (calculated)

-0.256

Length

491 amino acids

Sequence
(BLAST)

001: MLAGINPVVI SRLQEFPPKS KLDPTIYGNQ NSTITTEHVK DKLDGLTVDE AIKTNRLFIL NHHDIVMPLL RKINMSANTK AYASRTLLFL QDNRTLKPLA
101: IELSLPHPDG DQFGTVSKVY TPADQGVEGS IWQLAKAYVA VNDMGIHQLI SHWLNTHAVI EPFVIATNRQ LSVLHPIHKL LYPHFRNTMN INALARETLA
201: TCGGFVETYL FPAKYSMEMS AAAYKDWVFN EQALPADLIK RGVAVEDSSS PHGIRLLILD YPYAIDGLEI WAAINSWVTE YCKFYYKSDE TVQKDTELQA
301: WWKELREEGH GDKKDEAWWP KMQTRQELID CCTIIIWIAS ALHAAVNFGL YSYAGFLPNR PSLSWNLMPE PGSAEYEELK TNPDKVFLKT FVPQLQTLLE
401: MSIFEVLSRH DSDEVYLGQR DSPEWTKDKE PLVAFERFVK MLNDIENRIM IMNSHKSWKN RSGPVKVPYT LLFPKSQEGL TGKGIPNSVS I

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.