Factsheet for PGSC0003DMT400063477

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099210.2.1	Tomato	cytosol	96.73	95.94
VIT_14s0128g00780.t01	Wine grape	cytosol	67.76	67.52
CDY70916	Canola	cytosol	39.72	67.46
PGSC0003DMT400063654	Potato	cytosol	38.43	67.01
PGSC0003DMT400028158	Potato	cytosol	67.29	66.82
VIT_14s0128g00790.t01	Wine grape	cytosol	67.17	66.17
PGSC0003DMT400054145	Potato	cytosol	65.65	65.5
VIT_06s0004g01580.t01	Wine grape	cytosol	25.47	65.07
KRH68548	Soybean	cytosol	65.19	65.03
PGSC0003DMT400063469	Potato	cytosol	64.02	65.01
KRH33939	Soybean	cytosol, endoplasmic reticulum	64.95	64.28
PGSC0003DMT400063446	Potato	cytosol	60.05	63.93
Os03t0700400-00	Rice	cytosol, plasma membrane	9.35	63.49
AT1G55020.1	Thale cress	cytosol	62.97	62.75
PGSC0003DMT400063461	Potato	cytosol	50.82	62.68
Bra021322.1-P	Field mustard	cytosol	62.5	62.43
PGSC0003DMT400081370	Potato	cytosol	63.78	62.26
PGSC0003DMT400063452	Potato	cytosol	57.13	61.2
TraesCS4A01G275800.1	Wheat	cytosol	16.94	60.67
GSMUA_AchrUn_...	Banana	cytosol	59.23	59.3
GSMUA_Achr1P22970_001	Banana	cytosol	58.41	59.1
GSMUA_AchrUn_...	Banana	cytosol	53.86	58.8
GSMUA_Achr1P24370_001	Banana	cytosol	57.24	57.85
TraesCS4A01G359800.1	Wheat	cytosol	35.86	57.82
TraesCS5A01G378800.2	Wheat	cytosol	52.34	57.58
TraesCS6D01G122000.1	Wheat	cytosol	20.79	57.42
Zm00001d033623_P003	Maize	cytosol	57.83	57.09
GSMUA_Achr6P25110_001	Banana	cytosol	52.92	57.05
GSMUA_Achr6P25090_001	Banana	cytosol	55.84	57.04
EER93612	Sorghum	cytosol	57.13	56.47
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	57.71	56.33
Os03t0738600-01	Rice	plasma membrane, plastid	56.66	55.75
TraesCS5B01G382600.1	Wheat	cytosol	55.84	55.52
TraesCS4D01G035200.1	Wheat	cytosol	53.74	55.49
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	55.72	55.4
Os03t0699700-01	Rice	cytosol, plastid	55.72	55.27
TraesCS5B01G382400.1	Wheat	cytosol, golgi	55.14	55.14
TraesCS5A01G378900.1	Wheat	cytosol	55.61	55.09
HORVU5Hr1G093770.1	Barley	cytosol	55.26	54.81
TraesCS4B01G037700.3	Wheat	cytosol, golgi	54.91	54.59
EES04028	Sorghum	cytosol	55.61	54.52
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	55.02	54.51
TraesCS5B01G382300.1	Wheat	cytosol, unclear	54.91	54.4
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	54.91	54.4
TraesCS4B01G037800.1	Wheat	cytosol	55.72	54.33
TraesCS5A01G378700.1	Wheat	cytosol	54.79	54.28
TraesCS4D01G035100.1	Wheat	cytosol	55.61	54.21
TraesCS4A01G275900.1	Wheat	cytosol, unclear	55.61	54.21
EER93611	Sorghum	cytosol	56.19	54.17
EES04025	Sorghum	cytosol	54.91	54.15
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	55.37	53.99
GSMUA_Achr9P19250_001	Banana	plasma membrane	59.93	53.94
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	55.61	53.66
Zm00001d033624_P001	Maize	cytosol	55.26	53.33
TraesCS5D01G388800.1	Wheat	cytosol	55.84	53.29
KXG37783	Sorghum	cytosol	55.49	53.19
Zm00001d042541_P002	Maize	cytosol	54.91	53.17
TraesCS3B01G602500.1	Wheat	cytosol	54.32	52.78
TraesCS6B01G160400.1	Wheat	mitochondrion	53.5	52.46
TraesCS6A01G132500.1	Wheat	mitochondrion	53.5	52.46
TraesCS6A01G132200.1	Wheat	mitochondrion	53.5	52.46
Zm00001d042540_P008	Maize	cytosol	54.44	52.24
TraesCS5A01G379000.1	Wheat	nucleus, unclear	46.96	52.21
TraesCS3B01G605700.1	Wheat	cytosol	53.74	51.98
TraesCS5D01G513100.1	Wheat	cytosol	52.69	51.96
Os11t0575600-01	Rice	mitochondrion	52.57	51.84
HORVU5Hr1G117110.1	Barley	cytosol	52.22	50.39
PGSC0003DMT400074322	Potato	cytosol	25.82	50.0
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	28.5	50.0
PGSC0003DMT400034472	Potato	cytosol	25.93	49.66
GSMUA_Achr6P25080_001	Banana	cytosol	44.63	49.29
TraesCS6B01G395700.1	Wheat	cytosol	46.38	48.89
TraesCS6D01G121900.1	Wheat	mitochondrion	24.53	46.98
PGSC0003DMT400020118	Potato	cytosol	36.8	45.45
CDY43490	Canola	cytosol, plasma membrane	62.38	44.39
PGSC0003DMT400081909	Potato	plastid	43.34	41.27
PGSC0003DMT400058933	Potato	plastid	43.46	40.7
PGSC0003DMT400045047	Potato	cytosol, plastid	42.41	39.89
PGSC0003DMT400074324	Potato	cytosol	14.14	34.97
GSMUA_Achr6P25100_001	Banana	cytosol	43.69	3.11

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M1CAQ0	PFAM:PF00305	PFAM:PF01477	EnsemblPlantsGene:PGSC0003DMG400024693
PGSC:PGSC0003DMG400024693	EnsemblPlants:PGSC0003DMT400063477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF53
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000296C9F0	SEG:seg	:

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400024693]

Coordinates

chr1:+:77019226..77023084

Molecular Weight (calculated)

97895.8 Da

IEP (calculated)

6.058

GRAVY (calculated)

-0.461

Length

856 amino acids

Sequence
(BLAST)

001: MDENASKKAR YEAGETKTIK GTVVLMKKNF LDLTDAKDAV VDQIDEILGH KVSLQLISAV NTDVVLANKG RGKLGKPAHL EGWKISTLTE RDATFSVNFE
101: WNEEIGVPGA FLIKNSHHNE FYLKTLTLDD VPGHGKVCFV CNSWIYHSEY YKKDRVFFAN QTYLPNETPA PLQYYREEEL ENLRGNGTGK REEWDRVYDY
201: DVYNDLGDPE KGETHVRKIL GGSSDYPYPR RGRTGRPPTK IDPKSESRLP LRKTLGIYVP RDERFSPLKM SDFAATGLKS IFQFLVPGFL ALFNKTPFEF
301: DSFKDMSKLY EGGIKLPSKS FMDKIRDHLP LELLKELLRS DGDYAFKFPM PQVIREDKSA WGTDEEFARE MLAGLNPVVI RCLQEFPPIS KLDPTLFGEQ
401: RSTISEEHVK HNLDGLTIEQ AIKEKRLFIL DHHDSLMPYL KRINTTTTQT YASRTLLFLK EDGSLKPLAI ELTREDEQSR IVSNVYTPAE TGAEATIWQL
501: AKAYVTVNDS GFHQLVSHWL HTHAVTEPFI IATNRQLSVL HPIYKLLHPH FRDTMYINAL ARQILINADG ILEMTVFPGK FSLEMSATIY KDWVFPQQAL
601: PADLIKRGMA VEDSSQPHGI KLVIEDYPYA VDGLEIWSAI NTWVRDYCNF YYKADEMIKI DTELQSWWKE AREKGHGDKK EEPWWPKMQT REELIDCCTI
701: IIWIASALHA AINFGQYPYG GYPPNRPSMS RRFMPEPETS EYEELKSNPE KAFLNTITPL PQSILGISLI EALSLHTSDE VFLGKRAPEW TTDEEPLQAF
801: ERFGKKLEEI EQKIIKTNND PNLKNRVGPA NIPYTLLCPS SELGLTGRGI PNSVSI

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.