Factsheet for PGSC0003DMT400054145

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	94.29	94.07
PGSC0003DMT400028158	Potato	cytosol	77.97	77.61
PGSC0003DMT400063654	Potato	cytosol	43.36	75.76
PGSC0003DMT400063446	Potato	cytosol	70.4	75.12
PGSC0003DMT400063461	Potato	cytosol	60.02	74.21
VIT_14s0128g00780.t01	Wine grape	cytosol	73.08	72.99
CDY70916	Canola	cytosol	42.77	72.82
VIT_14s0128g00790.t01	Wine grape	cytosol	72.73	71.81
PGSC0003DMT400063452	Potato	cytosol	66.55	71.46
VIT_06s0004g01580.t01	Wine grape	cytosol	26.92	68.96
KRH68548	Soybean	cytosol	68.18	68.18
Bra021322.1-P	Field mustard	cytosol	67.13	67.21
KRH33939	Soybean	cytosol, endoplasmic reticulum	67.25	66.71
PGSC0003DMT400081370	Potato	cytosol	67.83	66.36
AT1G55020.1	Thale cress	cytosol	66.32	66.24
PGSC0003DMT400063469	Potato	cytosol	64.8	65.95
PGSC0003DMT400063477	Potato	cytosol	65.5	65.65
GSMUA_Achr1P22970_001	Banana	cytosol	64.34	65.25
GSMUA_AchrUn_...	Banana	cytosol	64.1	64.33
Os03t0700400-00	Rice	cytosol, plasma membrane	9.32	63.49
GSMUA_AchrUn_...	Banana	cytosol	57.34	62.76
GSMUA_Achr1P24370_001	Banana	cytosol	61.66	62.46
TraesCS4A01G275800.1	Wheat	cytosol	17.25	61.92
GSMUA_Achr6P25090_001	Banana	cytosol	59.67	61.1
GSMUA_Achr6P25110_001	Banana	cytosol	56.41	60.96
TraesCS6D01G122000.1	Wheat	cytosol	21.91	60.65
TraesCS4A01G359800.1	Wheat	cytosol	37.41	60.45
GSMUA_Achr9P19250_001	Banana	plasma membrane	65.97	59.52
EER93612	Sorghum	cytosol	59.91	59.35
Zm00001d033623_P003	Maize	cytosol	59.91	59.28
TraesCS5A01G378800.2	Wheat	cytosol	53.61	59.13
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	59.44	58.15
TraesCS4D01G035100.1	Wheat	cytosol	59.21	57.86
TraesCS5B01G382400.1	Wheat	cytosol, golgi	57.58	57.71
Os03t0699700-01	Rice	cytosol, plastid	58.04	57.71
TraesCS4A01G275900.1	Wheat	cytosol, unclear	58.97	57.63
HORVU5Hr1G093770.1	Barley	cytosol	57.93	57.59
TraesCS4B01G037800.1	Wheat	cytosol	58.86	57.52
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	58.86	57.52
Os03t0738600-01	Rice	plasma membrane, plastid	58.28	57.47
EER93611	Sorghum	cytosol	59.44	57.43
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	57.58	57.38
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	58.97	57.05
TraesCS5B01G382600.1	Wheat	cytosol	57.23	57.03
TraesCS5A01G378900.1	Wheat	cytosol	57.34	56.94
TraesCS4B01G037700.3	Wheat	cytosol, golgi	56.99	56.79
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	57.11	56.71
TraesCS4D01G035200.1	Wheat	cytosol	54.66	56.57
TraesCS5B01G382300.1	Wheat	cytosol, unclear	56.76	56.37
TraesCS5A01G378700.1	Wheat	cytosol	56.76	56.37
Zm00001d033624_P001	Maize	cytosol	58.16	56.26
EES04028	Sorghum	cytosol	57.23	56.24
EES04025	Sorghum	cytosol	56.76	56.11
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	56.29	55.9
GSMUA_Achr6P25080_001	Banana	cytosol	49.77	55.1
KXG37783	Sorghum	cytosol	57.11	54.87
TraesCS3B01G602500.1	Wheat	cytosol	56.29	54.82
TraesCS5A01G379000.1	Wheat	nucleus, unclear	49.18	54.81
Zm00001d042541_P002	Maize	cytosol	56.41	54.75
TraesCS5D01G388800.1	Wheat	cytosol	57.23	54.74
TraesCS3B01G605700.1	Wheat	cytosol	56.41	54.69
Zm00001d042540_P008	Maize	cytosol	56.53	54.37
TraesCS6B01G160400.1	Wheat	mitochondrion	55.24	54.3
TraesCS6A01G132500.1	Wheat	mitochondrion	55.24	54.3
TraesCS6A01G132200.1	Wheat	mitochondrion	55.24	54.3
TraesCS5D01G513100.1	Wheat	cytosol	54.78	54.15
HORVU5Hr1G117110.1	Barley	cytosol	54.55	52.76
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	29.95	52.66
Os11t0575600-01	Rice	mitochondrion	52.68	52.07
TraesCS6B01G395700.1	Wheat	cytosol	48.14	50.86
PGSC0003DMT400074322	Potato	cytosol	25.87	50.23
PGSC0003DMT400034472	Potato	cytosol	25.64	49.22
CDY43490	Canola	cytosol, plasma membrane	67.02	47.8
PGSC0003DMT400020118	Potato	cytosol	37.88	46.9
TraesCS6D01G121900.1	Wheat	mitochondrion	24.24	46.53
PGSC0003DMT400058933	Potato	plastid	45.45	42.67
PGSC0003DMT400081909	Potato	plastid	43.36	41.38
PGSC0003DMT400045047	Potato	cytosol, plastid	41.84	39.45
PGSC0003DMT400074324	Potato	cytosol	13.29	32.95
GSMUA_Achr6P25100_001	Banana	cytosol	48.72	3.48

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
ProteinID:AAB31252	ProteinID:AAB31252.1	ProteinID:AAB67858	ProteinID:AAB67858.1	ProteinID:AAB67860	ProteinID:AAB67860.1
ProteinID:AAB81594	ProteinID:AAB81594.1	ProteinID:AAB81595	ProteinID:AAB81595.1	ProteinID:AAD04258	ProteinID:AAD04258.1
EMBL:AF019613	EMBL:AF019614	EMBL:AF039651	ProteinID:CAA55724	ProteinID:CAA55724.1	ProteinID:CAA64764
ProteinID:CAA64764.1	ProteinID:CAA64765	ProteinID:CAA64765.1	ProteinID:CAA64766	ProteinID:CAA64766.1	ProteinID:CAA64767
ProteinID:CAA64767.1	ProteinID:CAA64768	ProteinID:CAA64768.1	ProteinID:CAA64769	ProteinID:CAA64769.1	ProteinID:CAA64966
ProteinID:CAA64966.1	ProteinID:CAA64967	ProteinID:CAA64967.1	ProteinID:CAB65460	ProteinID:CAB65460.1	CHEMBL:CHEMBL3317
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016165	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M1BVW6	PFAM:PF00305	PFAM:PF01477	EnsemblPlantsGene:PGSC0003DMG400020999
PGSC:PGSC0003DMG400020999	EnsemblPlants:PGSC0003DMT400054145	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF53
EMBL:S73865	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EMBL:U60200	EMBL:U60201
UniParc:UPI000294B92A	EMBL:X79107	EMBL:X95511	EMBL:X95512	EMBL:X95513	EMBL:X95514
EMBL:X95515	EMBL:X95516	EMBL:X95666	EMBL:X95667	EMBL:Y18548	SEG:seg

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400020999]

Coordinates

chr8:-:6045342..6050086

Molecular Weight (calculated)

96787.0 Da

IEP (calculated)

5.645

GRAVY (calculated)

-0.367

Length

858 amino acids

Sequence
(BLAST)

001: MGGRELFGGH DDSKKVKGTV VMMKKNALDF TDLAGSVTDK IFEAFGQKVS FQLISSVQGD PRNGLQGKHS NPAYLENSLF TLTPLTAGSE TAFGVTFDWN
101: EEFGVPGAFI IKNTHINEFF LKSLTLEDVP NHGKVHFVCN SWVYPSFRYK SDRIFFANQP YLPSKTPELL RKYRENELLT LRGDGTGKRE AWDRIYDYDI
201: YNDLGNPDQG QENVRTTLGG SAEYPYPRRG RTGRPPTRTD PKSESRIPLI LSLDIYVPRD ERFGHLKMSD FLTYALKSIV QFILPELHAL FDGTPNEFDS
301: FEDVLRLYEG GIKLPQGPLF KALTAAIPLE MIKELLRTDG EGILRFPTPL VIKDSKTAWR TDEEFAREML AGVNPIIISR LQEFPPKSKL DPEAYGNQNS
401: TITAEHIEDK LDGLTVDEAM NNNKLFILNH HDLLIPYLRR INTTITKTYA SRTLLFLQDN GSLKPLAIEL SLPHPDGDQF GVTSKVYTPS DQGVESSIWQ
501: LAKAYVAVND AGVHQLISHW LNTHAVIEPF VIATNRQLSV LHPIHKLLYP HFRDTMNINA SARQILINAG GVLESTVFQS KFALEMSAVV YKDWVFPDQA
601: LPADLVKRGV AVEDSSSPHG VRLLIEDYPY AVDGLEIWSA IKSWVTDYCS FYYGSDEEIL KDNELQAWWK ELREVGHGDK KNEPWWPEME TPQELIDSCT
701: TIIWIASALH AAVNFGQYPY AGYLPNRPTV SRRFMPEPGT PEYEELKKNP DKAFLKTITA QLQTLLGVSL VEILSRHTTD EIYLGQRESP EWTKDKEPLA
801: AFDKFGKKLT DIEKQIIQRN GDNILTNRSG PINAPYTLLF PTSEGGLTGK GIPNSVSI

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.