Factsheet for PGSC0003DMT400058933

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 1
cytosol 4

Predictors

GFP

MS/MS

Papers

plastid: 17210991

gfp PMID: 17210991 doi

T Farmaki, M Sanmartín, P Jiménez, M Paneque, C Sanz, G Vancanneyt, J León, JJ Sánchez-Serrano

Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, Campus de Cantoblanco, Universidad Autónoma de Madrid, Carretera de Colmenar Viejo km 15,500. 28049 Madrid, Spain. mfarmaki@certh.gr

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037344
PGSC0003DMT400057390

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	PGSC0003DMT400037344	AT4G26630.1	25387881
AT1G17420.1	PGSC0003DMT400057390	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g122340.2.1	Tomato	cytosol	95.84	96.48
KRH06197	Soybean	nucleus	76.59	75.92
KRH47615	Soybean	nucleus	76.7	75.62
KRH69027	Soybean	plastid	72.87	73.92
VIT_09s0002g01080.t01	Wine grape	cytosol	74.73	73.68
KRG97300	Soybean	plastid	71.99	73.19
CDX82146	Canola	plastid	67.4	72.47
AT1G17420.1	Thale cress	cytosol, plastid	72.87	72.47
CDY21750	Canola	cytosol, mitochondrion, plastid	72.43	72.03
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	72.21	71.82
CDX81825	Canola	cytosol	71.99	71.6
AT1G72520.1	Thale cress	plastid	72.43	71.49
Bra008037.1-P	Field mustard	plastid	71.77	71.38
CDY49853	Canola	plastid	71.66	71.27
CDY64617	Canola	cytosol	71.44	71.06
CDX96769	Canola	cytosol	71.33	70.95
Bra016602.1-P	Field mustard	cytosol	71.12	70.73
HORVU5Hr1G055110.2	Barley	mitochondrion	26.59	68.84
GSMUA_Achr9P16020_001	Banana	plastid	63.57	66.32
GSMUA_Achr10P...	Banana	cytosol	63.35	65.8
GSMUA_Achr3P07870_001	Banana	plastid	62.69	65.19
GSMUA_Achr8P22700_001	Banana	plastid	60.18	64.86
Os04t0447100-01	Rice	cytosol	55.8	64.07
Os03t0179900-01	Rice	plastid	64.33	64.05
EER95400	Sorghum	mitochondrion	64.22	63.53
HORVU4Hr1G076570.6	Barley	cytosol, plastid	63.24	63.1
TraesCS4B01G295200.1	Wheat	plastid	63.57	62.95
PGSC0003DMT400034472	Potato	cytosol	30.74	62.86
TraesCS4D01G294100.1	Wheat	plastid	63.02	62.47
TraesCS4A01G009400.1	Wheat	plastid	63.02	62.41
Zm00001d027893_P001	Maize	plastid	64.33	60.74
TraesCS2D01G313400.1	Wheat	plastid	58.97	59.23
TraesCS2B01G333600.1	Wheat	plastid	59.41	59.21
EES10882	Sorghum	plastid	59.63	58.98
TraesCS2A01G315100.2	Wheat	plastid	59.41	57.77
Zm00001d003533_P001	Maize	plastid	59.08	57.39
Zm00001d025524_P001	Maize	plastid	57.99	57.05
PGSC0003DMT400045047	Potato	cytosol, plastid	53.5	53.74
PGSC0003DMT400020118	Potato	cytosol	38.07	50.22
PGSC0003DMT400063654	Potato	cytosol	26.15	48.68
PGSC0003DMT400054145	Potato	cytosol	42.67	45.45
PGSC0003DMT400081909	Potato	plastid	44.53	45.27
PGSC0003DMT400074322	Potato	cytosol	21.88	45.25
PGSC0003DMT400063446	Potato	cytosol	39.06	44.4
PGSC0003DMT400028158	Potato	cytosol	41.25	43.74
PGSC0003DMT400063477	Potato	cytosol	40.7	43.46
PGSC0003DMT400063469	Potato	cytosol	40.04	43.42
PGSC0003DMT400063461	Potato	cytosol	32.82	43.23
PGSC0003DMT400081370	Potato	cytosol	41.14	42.87
PGSC0003DMT400063452	Potato	cytosol	36.87	42.18
PGSC0003DMT400074324	Potato	cytosol	10.83	28.61

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
ProteinID:CAA65269	ProteinID:CAA65269.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009534
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0016165	GO:GO:0016491
GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M1C3J4	PFAM:PF00305	PFAM:PF01477
EnsemblPlantsGene:PGSC0003DMG400022894	PGSC:PGSC0003DMG400022894	EnsemblPlants:PGSC0003DMT400058933	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF67	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0002949972	EMBL:X96406
SEG:seg	:	:	:	:	:

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400022894]

Coordinates

chr3:+:61447721..61452116

Molecular Weight (calculated)

102863.0 Da

IEP (calculated)

7.505

GRAVY (calculated)

-0.390

Length

914 amino acids

Sequence
(BLAST)

001: MALAKEIMGI SLLEKSSSFM NSSSMALFNP NNYHKENHLW FNQQFQGRRN LSRRKAFRQS TMAAISENLI KVVPEKAVKF KVRAVVTVRN KNKEDLKETI
101: VKHLDAFTDK IGRNVTLELI STDMDPNTKG PKKSNQAVLK DWSKKSNLKT ERVNYTAEFI VDSNFGNPGA ITVTNKHQQE FFLESITIEG FACGPVHFPC
201: NSWVQPKKDH PGKRIFFSNQ PYLPDETPAG LKSLRERELR DLRGDGKGVR KLSDRIYDYD IYNDLGNPDK GIDFARPKLG GDDNVPYPRR CRSGRVPTDT
301: DISAESRVEK PNPTYVPRDE QFEESKMNTF STSRLKAVLH NLIPSLMASI SSNNHDFKGF SDIDSLYSKG LLLKLGLQDE VLKKLPLPKV VSSIKEGDLL
401: KYDTPKILSK DKFAWLRDDE FARQAIAGVN PVSIEKLQVF PPVSKLNPEI YGPQESALKE AHILGHLNGM TVQEALDANK LFIVDHHDVY LPFLDRINAL
501: DGRKAYATRT IFFLSDVGTL KPIAIELSLP QTGPSSRSKR VVTPPVCATG NWTWQIAKAH VCANDAGVHQ LVNHWLRTHA CLEPFILAAH RQLSAMHPIY
601: KLLDPHMRYT LEINGLARQS LLNADGVIEA CFTPGRYCME ISAAAYKNWR FDLEGLPADL IRRGIAVPDS TQPHGLKLLI EDYPYAADGL MIWGAIEGWV
701: RDYVNQYYPS SAQVCSDREL QAWYAETINV GHVELRNEDW WPTLAAPEDL ISILTTLIWL ASAQHAALNF GQYPYGGYVP NRPPLMRRLI PDENDPEYAV
801: FLADPQKYFF SALPSLLQAT KFMAVVDTLS THSPDEEYLG ERHQPSTWTG DAEIVEAFYK FSAEIGRIEK EIDERNADTK LKNRCGAGVL PYELLAPSSG
901: PGVTCRGVPN SVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.