CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98502
KRG98507
KRH46360
KRH46364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	KRG98502	AT4G26630.1	25387881
AT1G17420.1	KRG98507	AT4G26630.1	25387881
AT1G17420.1	KRH46360	AT4G26630.1	25387881
AT1G17420.1	KRH46364	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97300	Soybean	plastid	93.34	93.55
KRH30640	Soybean	cytosol	17.98	86.63
KRH06197	Soybean	nucleus	79.02	77.22
KRH47615	Soybean	nucleus	79.25	77.02
Solyc03g122340.2.1	Tomato	cytosol	73.7	73.13
PGSC0003DMT400058933	Potato	plastid	73.92	72.87
VIT_09s0002g01080.t01	Wine grape	cytosol	72.47	70.44
CDX81825	Canola	cytosol	70.03	68.66
AT1G17420.1	Thale cress	cytosol, plastid	69.92	68.55
AT1G72520.1	Thale cress	plastid	70.37	68.47
CDY64617	Canola	cytosol	69.81	68.44
CDX96769	Canola	cytosol	69.7	68.34
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	69.59	68.23
CDY21750	Canola	cytosol, mitochondrion, plastid	69.59	68.23
Bra016602.1-P	Field mustard	cytosol	69.48	68.12
Bra008037.1-P	Field mustard	plastid	68.92	67.57
CDY49853	Canola	plastid	68.81	67.46
CDX82146	Canola	plastid	63.6	67.41
HORVU5Hr1G055110.2	Barley	mitochondrion	25.97	66.29
GSMUA_Achr10P...	Banana	cytosol	61.15	62.61
GSMUA_Achr9P16020_001	Banana	plastid	60.49	62.21
GSMUA_Achr8P22700_001	Banana	plastid	58.49	62.15
GSMUA_Achr3P07870_001	Banana	plastid	60.38	61.89
Os04t0447100-01	Rice	cytosol	53.94	61.06
Os03t0179900-01	Rice	plastid	62.15	61.0
EER95400	Sorghum	mitochondrion	61.82	60.28
HORVU4Hr1G076570.6	Barley	cytosol, plastid	60.16	59.17
TraesCS4B01G295200.1	Wheat	plastid	60.6	59.15
TraesCS4D01G294100.1	Wheat	plastid	60.16	58.79
TraesCS4A01G009400.1	Wheat	plastid	60.04	58.61
KRH10882	Soybean	cytosol	28.08	58.29
TraesCS2B01G333600.1	Wheat	plastid	58.82	57.8
TraesCS2D01G313400.1	Wheat	plastid	58.16	57.58
EES10882	Sorghum	plastid	58.93	57.47
Zm00001d027893_P001	Maize	plastid	61.15	56.92
TraesCS2A01G315100.2	Wheat	plastid	58.49	56.06
Zm00001d003533_P001	Maize	plastid	58.16	55.69
Zm00001d025524_P001	Maize	plastid	57.27	55.54
KRH21441	Soybean	cytosol	53.61	53.08
KRH50048	Soybean	cytosol	53.05	52.53
KRH42646	Soybean	plastid	52.83	51.68
KRH35534	Soybean	cytosol	22.97	46.21
KRH44093	Soybean	endoplasmic reticulum	42.73	45.51
KRH24671	Soybean	cytosol, plastid	45.84	45.19
KRG89889	Soybean	cytosol, plastid	43.06	45.12
KRH16725	Soybean	cytosol	11.54	45.02
KRH29669	Soybean	plastid	44.95	44.95
KRH29668	Soybean	nucleus	45.17	44.92
KRH62399	Soybean	cytosol, endoplasmic reticulum	11.76	44.92
KRH44090	Soybean	endoplasmic reticulum	42.4	44.42
KRG89883	Soybean	cytosol, plastid	42.06	44.12
KRH23266	Soybean	cytosol	40.29	43.95
KRG89888	Soybean	nucleus	43.95	43.85
KRH68548	Soybean	cytosol	41.73	43.82
KRH47522	Soybean	endoplasmic reticulum, nucleus	41.95	43.7
KRH17965	Soybean	plastid	44.51	43.68
KRH10050	Soybean	endoplasmic reticulum	41.51	43.64
KRH62403	Soybean	cytosol, endoplasmic reticulum	10.99	43.61
KRH44095	Soybean	endoplasmic reticulum	41.84	43.53
KRH23265	Soybean	endoplasmic reticulum, nucleus	41.73	43.42
KRH44094	Soybean	endoplasmic reticulum	41.73	43.37
KRH10051	Soybean	endoplasmic reticulum, nucleus	41.18	43.34
KRH47525	Soybean	endoplasmic reticulum	41.73	43.32
KRH47066	Soybean	endoplasmic reticulum, nucleus	41.18	43.19
KRH33939	Soybean	cytosol, endoplasmic reticulum	41.4	43.12
KRH18682	Soybean	cytosol, mitochondrion	43.51	43.03
KRH44097	Soybean	cytosol, endoplasmic reticulum	41.4	42.97
KRH47067	Soybean	endoplasmic reticulum	41.07	42.82
KRH23268	Soybean	endoplasmic reticulum	40.51	42.79
KRH57987	Soybean	cytosol	12.21	42.64
KRH23269	Soybean	endoplasmic reticulum	38.73	42.46
KRH10053	Soybean	endoplasmic reticulum	40.07	42.32
KRH47069	Soybean	endoplasmic reticulum	21.2	41.98
KRH44092	Soybean	nucleus	39.29	41.31
KRG91271	Soybean	cytosol	39.29	41.26
KRH13357	Soybean	endoplasmic reticulum	10.99	40.91
KRH07345	Soybean	cytosol, plastid	38.4	40.19
KRH66214	Soybean	cytosol	38.51	40.07
KRH47064	Soybean	endoplasmic reticulum	25.31	40.0
KRG88464	Soybean	cytosol	18.31	36.18

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100800065	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	EMBL:ACUP02002129	EnsemblPlantsGene:GLYMA_03G264300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	UniProt:K7KH90	EnsemblPlants:KRH69027
ProteinID:KRH69027	ProteinID:KRH69027.1	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF56	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
UniParc:UPI000233A92D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:45704206..45708817

Molecular Weight (calculated)

102139.0 Da

IEP (calculated)

7.957

GRAVY (calculated)

-0.345

Length

901 amino acids

Sequence
(BLAST)

001: MALSKELMGF SSFFSASSKV FLHNKHGTFW VNPILLPSEN PRVMRLRKGA KFPVAAISED LIKTTLTVQA EKPVQFKVRA VVTVRNKIKE DFKETMLKHF
101: DAINDRIGTR NVVLELISTE IDPKTKSPKK SSKATLKDWS KKSNVKAERV NYTTEFIVDS NFGVPGAITV TNKHQREFFL ESITIEGFAS GAVHFPCKSW
201: VQGERIFFSN QTYLPGDTPA GLRVLREKEL INLRGDGKGV RKLSDRIYDF DTYNDLGNPD EGVELTRPTL GGSQNHPYPR RCRTGRAPTD TDMHAESRVE
301: MPLPMYVPRD EQFNESKLNT FVIKRLKAVL HNLIPGLKAS LSANNHDFNR FSDIDDLYSD EILNKIPLPQ VLTKIQDCGR GLLKYDTPKI ISKDKFAWLR
401: DDEFARQAIA GVNPVNIEGL KVFPPVSKLD PEIYGHQESA LKEEHILGQL NGMTVQQAIV ENKLFMINYH DVYVPFLDEI NALDGRKSYA TRTIFFLTPL
501: GTLKPIAIEL SLGPSSGWKR VVTPPVDATT NWKWQLAKAH VCANDAGVHQ LVNHWLRTHA CMEPFILSAH RQLSAMHPVF KLLDPHMRYT LDINALARQK
601: LINADGIIES CFTPGRYCME ISCAAYKNLW RFDMEGLPAD LIRRGMAVPD PTQPNGVKLL IEDYPYATDG LLIWSAIENW VRTYVNHYYH HSNSSLICND
701: KELQAWYSES INVGHADLRH ERWWPTLNNS EDLVSILTTL IWTVSAQHAA INFGQYPYGG YVPNRPPLMR RLIPEAEVES TSTEYANFLA DPQKFFLNAL
801: PSVLQATKYM AIVDILSTHS SDEEYLGERR HSSIWSGDAE IIQAFYSFST EIRRIENEIE KRNRDPTLRN RCGAGVLPYE LLAPTSQPGV TCRGIPNSVS
901: T

Best Arabidopsis Sequence Match ( AT1G72520.1 )
(BLAST)

001: MALANEIMGS RLIFERSSSL ASPFHSRFSI KKKTQRTQFS INPFDPRPMR AVNSSGVVAA ISEDLVKTLR ISTVGRKQEK EEEEEKSVKF KVRAVATVRN
101: KNKEDFKETL VKHLDAFTDK IGRNVVLELM STQVDPKTNE PKKSKAAVLK DWSKKSNSKA ERVHYTAEFT VDSAFGSPGA ITVTNKHQKE FFLESITIEG
201: FACGPVHFPC NSWVQSQKDH PSKRILFTNQ PYLPSETPSG LRTLREKELE NLRGNGKGER KLSDRIYDYD VYNDIGNPDI SRELARPTLG GREFPYPRRC
301: RTGRSSTDTD MMSERRVEKP LPMYVPRDEQ FEESKQNTFA ACRLKAVLHN LIPSLKASIL AEDFANFGEI DSLYKEGLLL KLGFQDDMFK KFPLPKIVTT
401: LQKSSEGLLR YDTPKIVSKD KYAWLRDDEF ARQAIAGINP VNIERVTSYP PVSNLDPEIY GPGLHSALTE DHIIGQLDGL TVQQALETNR LFMVDYHDIY
501: LPFLDRINAL DGRKAYATRT ILFLTRLGTL KPIAIELSLP SQSSSNQKSK RVVTPPVDAT SNWMWQLAKA HVGSNDAGVH QLVNHWLRTH ACLEPFILAA
601: HRQLSAMHPI FKLLDPHMRY TLEINAVARQ TLISADGVIE SCFTAGQYGL EISSAAYKNK WRFDMEGLPA DLIRRGMAVP DPTQPHGLKL LVEDYPYAND
701: GLLLWSAIQT WVRTYVERYY ANSNLIQTDT ELQAWYSESI NVGHADHRDA EWWPKLSTVE DLVSVITTII WLASAQHAAL NFGQYPYGGY VPNRPPLMRR
801: LIPDESDPEF TSFIEDPQKY FFSSMPSLLQ TTKFMAVVDT LSTHSPDEEY IGERQQPSIW TGDAEIVDAF YGFSAEIGRI EKEIDKRNRD PSRRNRCGAG
901: VLPYELMAPS SEPGVTCRGV PNSVSI

Arabidopsis Description

LOX4Lipoxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.