CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44093	Soybean	endoplasmic reticulum	84.88	86.29
KRH23265	Soybean	endoplasmic reticulum, nucleus	75.23	74.71
KRH10050	Soybean	endoplasmic reticulum	74.19	74.45
KRH44094	Soybean	endoplasmic reticulum	72.91	72.32
KRH47522	Soybean	endoplasmic reticulum, nucleus	72.44	72.02
KRH47067	Soybean	endoplasmic reticulum	71.98	71.64
KRH47066	Soybean	endoplasmic reticulum, nucleus	71.4	71.48
KRH23266	Soybean	cytosol	68.49	71.31
KRH47525	Soybean	endoplasmic reticulum	69.65	69.01
KRH44095	Soybean	endoplasmic reticulum	68.95	68.48
KRH44097	Soybean	cytosol, endoplasmic reticulum	68.72	68.09
KRH47064	Soybean	endoplasmic reticulum	45.12	68.07
KRH16725	Soybean	cytosol	18.26	67.97
KRH10051	Soybean	endoplasmic reticulum, nucleus	66.86	67.17
KRH47069	Soybean	endoplasmic reticulum	35.35	66.81
KRH23268	Soybean	endoplasmic reticulum	66.16	66.71
KRH10053	Soybean	endoplasmic reticulum	65.7	66.24
KRH62399	Soybean	cytosol, endoplasmic reticulum	18.14	66.1
KRH23269	Soybean	endoplasmic reticulum	62.79	65.69
KRH62403	Soybean	cytosol, endoplasmic reticulum	16.86	63.88
KRH35534	Soybean	cytosol	33.14	63.62
KRH57987	Soybean	cytosol	19.07	63.57
KRH68548	Soybean	cytosol	60.81	60.96
KRH33939	Soybean	cytosol, endoplasmic reticulum	60.7	60.35
TraesCS4A01G275800.1	Wheat	cytosol	16.74	60.25
KRH44092	Soybean	nucleus	60.0	60.21
KRH13357	Soybean	endoplasmic reticulum	16.63	59.09
GSMUA_Achr1P22970_001	Banana	cytosol	58.02	58.98
TraesCS6D01G122000.1	Wheat	cytosol	21.16	58.71
TraesCS4A01G359800.1	Wheat	cytosol	35.93	58.19
GSMUA_AchrUn_...	Banana	cytosol	57.79	58.13
GSMUA_AchrUn_...	Banana	cytosol	52.79	57.91
KRG91271	Soybean	cytosol	57.67	57.81
Os03t0700400-00	Rice	cytosol, plasma membrane	8.37	57.14
GSMUA_Achr1P24370_001	Banana	cytosol	55.47	56.32
GSMUA_Achr6P25110_001	Banana	cytosol	51.74	56.05
Os03t0699700-01	Rice	cytosol, plastid	55.81	55.62
GSMUA_Achr6P25090_001	Banana	cytosol	53.95	55.37
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	56.4	55.3
EER93612	Sorghum	cytosol	55.12	54.73
Zm00001d033623_P003	Maize	cytosol	55.0	54.56
EER93611	Sorghum	cytosol	56.16	54.39
TraesCS4D01G035200.1	Wheat	cytosol	52.21	54.16
Os03t0738600-01	Rice	plasma membrane, plastid	54.77	54.14
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	54.19	54.12
TraesCS4B01G037800.1	Wheat	cytosol	55.23	54.1
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	55.58	53.89
TraesCS4A01G275900.1	Wheat	cytosol, unclear	55.0	53.87
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	54.07	53.82
EES04025	Sorghum	cytosol	54.3	53.8
TraesCS4B01G037700.3	Wheat	cytosol, golgi	53.84	53.77
TraesCS4D01G035100.1	Wheat	cytosol	54.88	53.76
TraesCS5A01G378800.2	Wheat	cytosol	48.49	53.6
Zm00001d033624_P001	Maize	cytosol	55.0	53.33
TraesCS5A01G378700.1	Wheat	cytosol	53.49	53.24
TraesCS5B01G382300.1	Wheat	cytosol, unclear	53.49	53.24
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	54.3	53.19
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	53.37	53.12
EES04028	Sorghum	cytosol	53.84	53.04
KXG37783	Sorghum	cytosol	54.53	52.52
GSMUA_Achr9P19250_001	Banana	plasma membrane	58.02	52.47
TraesCS5B01G382400.1	Wheat	cytosol, golgi	52.21	52.45
TraesCS5B01G382600.1	Wheat	cytosol	52.44	52.38
Zm00001d042541_P002	Maize	cytosol	53.84	52.38
HORVU5Hr1G093770.1	Barley	cytosol	52.56	52.38
Zm00001d042540_P008	Maize	cytosol	54.19	52.24
TraesCS6A01G132200.1	Wheat	mitochondrion	53.02	52.23
TraesCS6A01G132500.1	Wheat	mitochondrion	53.02	52.23
TraesCS6B01G160400.1	Wheat	mitochondrion	52.91	52.12
TraesCS5A01G378900.1	Wheat	cytosol	51.86	51.62
TraesCS3B01G605700.1	Wheat	cytosol	52.67	51.19
KRG88464	Soybean	cytosol	27.09	51.1
TraesCS3B01G602500.1	Wheat	cytosol	52.33	51.08
TraesCS5A01G379000.1	Wheat	nucleus, unclear	45.23	50.52
TraesCS5D01G388800.1	Wheat	cytosol	52.44	50.28
TraesCS5D01G513100.1	Wheat	cytosol	50.58	50.12
HORVU5Hr1G117110.1	Barley	cytosol	51.4	49.83
Os11t0575600-01	Rice	mitochondrion	49.88	49.42
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	28.02	49.39
GSMUA_Achr6P25080_001	Banana	cytosol	43.95	48.77
TraesCS6B01G395700.1	Wheat	cytosol	44.42	47.04
TraesCS6D01G121900.1	Wheat	mitochondrion	23.26	44.74
KRH69027	Soybean	plastid	44.42	42.4
KRH66214	Soybean	cytosol	42.67	42.38
KRH07345	Soybean	cytosol, plastid	42.33	42.28
KRG89883	Soybean	cytosol, plastid	42.09	42.14
KRG97300	Soybean	plastid	43.72	41.82
KRH06197	Soybean	nucleus	44.53	41.54
KRH47615	Soybean	nucleus	44.77	41.53
KRG89889	Soybean	cytosol, plastid	41.51	41.51
KRH42646	Soybean	plastid	43.6	40.72
KRH29668	Soybean	nucleus	42.79	40.62
KRH10882	Soybean	cytosol	20.47	40.55
KRH29669	Soybean	plastid	42.44	40.51
KRH18682	Soybean	cytosol, mitochondrion	42.67	40.29
KRH24671	Soybean	cytosol, plastid	42.67	40.15
KRG89888	Soybean	nucleus	41.98	39.98
KRH17965	Soybean	plastid	42.44	39.76
KRH50048	Soybean	cytosol	39.07	36.92
KRH21441	Soybean	cytosol	38.95	36.81
KRH30640	Soybean	cytosol	7.33	33.69
GSMUA_Achr6P25100_001	Banana	cytosol	42.56	3.05

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
EntrezGene:547694	EMBL:ACUP02004908	EnsemblPlantsGene:GLYMA_08G189200	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	UniProt:I1KUQ0	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EnsemblPlants:KRH44090
ProteinID:KRH44090	ProteinID:KRH44090.1	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF48	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
UniParc:UPI00023389B3	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:15171986..15177581

Molecular Weight (calculated)

96748.9 Da

IEP (calculated)

7.172

GRAVY (calculated)

-0.285

Length

860 amino acids

Sequence
(BLAST)

001: MYSGVKGLFN RSQKVKGTVV LMRKNVLDIN SITSVRGLIG TGINIIGSTI DGLTSFLGRS VCLQLISATK ADGNGNGVVG KKTYLEGIIT SIPTLGAGQS
101: AFTIHFEWDA DMGIPGAFLI KNYMQVELFL VSLTLEDIPN QGSMHFVCNS WVYNSKVYEK DRIFFASETY VPSETPGPLV TYREAELQAL RGNGTGKRKE
201: WDRVYDYDVY NDLGNPDSGE NFARPVLGGS LTHPYPRRGR TGRKPTKKDP NSEKPGEAYI PRDENFGHLK SSDFLTYGLK SLTRSFLPAL KTVFDINFTP
301: NEFDSFEEVR ALCEGGIKLP TDILSKISPL PVLKEIFRTD GESVLKFSVP DLIKVSKSAW MTDEEFAREM IAGVNPCVIR RLQEFPPQSK LDPSVYGDQT
401: SKMTIDHLEI NLEGLTVDKA IKDQRLFILD HHDTFMPFLR RIDESKSSKA YATRTILFLK DDGTLKPLAI ELSLPHPGQQ QLGAYSKVIL PANQGVESTI
501: WLLAKAHVIV NDSCYHQLIS HWLNTHAVIE PFVIATNRNL SILHPIYKLL FPHYRDTMNI NALARQSLIN ADGFIEKTFL GGKYAVEISS SGYKNWVFLD
601: QALPADLIKR GMAIEDSSCP NGLRLVIEDY PYAVDGLEIW DAIKTWVQEY VSLYYATNDA IKKDHELQAW WKEVVEKGHG DLKDKPWWPK MQTLQELIQS
701: CSTIIWIASA LHAAVNFGQY PYGGFILNRP TLSRRWIPEE GTPEYDEMTK NPQKAYLRTI TPKFQALVDL SVIEILSRHA SDEVYLGQRD NPNWTSNPKA
801: IEAFKKFGKK LAEIETKISE RNHDPNLRNR TGPAQLPYTV LLPTSETGLT FRGIPNSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.