Factsheet for HORVU5Hr1G093700.3

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G382300.1	Wheat	cytosol, unclear	94.79	94.79
TraesCS5A01G378700.1	Wheat	cytosol	94.44	94.44
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	94.33	94.33
HORVU5Hr1G093770.1	Barley	cytosol	81.6	81.69
HORVU5Hr1G117110.1	Barley	cytosol	79.4	77.34
Os03t0738600-01	Rice	plasma membrane, plastid	75.69	75.17
EES04025	Sorghum	cytosol	74.31	73.96
EES04028	Sorghum	cytosol	73.84	73.08
Zm00001d042541_P002	Maize	cytosol	74.77	73.08
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	40.86	72.34
Zm00001d042540_P008	Maize	cytosol	73.61	71.3
CDY70916	Canola	cytosol	36.57	62.7
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	63.31	62.3
KRH16725	Soybean	cytosol	16.55	61.9
KRH35534	Soybean	cytosol	31.48	60.71
PGSC0003DMT400063654	Potato	cytosol	34.26	60.29
KRH62399	Soybean	cytosol, endoplasmic reticulum	16.32	59.75
GSMUA_Achr1P22970_001	Banana	cytosol	58.33	59.57
VIT_14s0128g00780.t01	Wine grape	cytosol	58.91	59.25
VIT_14s0128g00790.t01	Wine grape	cytosol	58.45	58.11
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	57.75	57.96
KRH57987	Soybean	cytosol	17.25	57.75
PGSC0003DMT400028158	Potato	cytosol	57.52	57.66
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	57.52	57.66
Bra021322.1-P	Field mustard	cytosol	57.06	57.53
PGSC0003DMT400063446	Potato	cytosol	53.01	56.97
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	56.25	56.51
PGSC0003DMT400054145	Potato	cytosol	55.9	56.29
KRH62403	Soybean	cytosol, endoplasmic reticulum	14.7	55.95
AT1G55020.1	Thale cress	cytosol	55.56	55.88
Solyc01g099180.2.1	Tomato	cytosol	55.21	55.85
KRH33939	Soybean	cytosol, endoplasmic reticulum	55.9	55.84
KRG91271	Soybean	cytosol	55.32	55.71
PGSC0003DMT400063461	Potato	cytosol	44.68	55.62
Solyc09g075860.2.1	Tomato	cytosol, nucleus	56.37	55.53
VIT_05s0020g03170.t01	Wine grape	cytosol	56.02	55.25
PGSC0003DMT400081370	Potato	cytosol	56.02	55.19
KRH68548	Soybean	cytosol	54.63	55.01
KRH44093	Soybean	endoplasmic reticulum	53.82	54.96
PGSC0003DMT400063477	Potato	cytosol	54.4	54.91
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	54.51	54.9
KRH23265	Soybean	endoplasmic reticulum, nucleus	54.86	54.73
KRH10050	Soybean	endoplasmic reticulum	54.28	54.73
KRH23266	Soybean	cytosol	52.31	54.72
Solyc01g099210.2.1	Tomato	cytosol	54.51	54.58
Solyc01g099200.2.1	Tomato	cytosol, plastid	52.89	54.34
KRH44090	Soybean	endoplasmic reticulum	53.82	54.07
PGSC0003DMT400063452	Potato	cytosol	50.0	54.07
PGSC0003DMT400063469	Potato	cytosol	52.66	53.97
KRH10051	Soybean	endoplasmic reticulum, nucleus	53.47	53.97
KRH44095	Soybean	endoplasmic reticulum	54.05	53.93
Bra039948.1-P	Field mustard	cytosol	55.32	53.89
KRH47522	Soybean	endoplasmic reticulum, nucleus	53.7	53.64
KRH10053	Soybean	endoplasmic reticulum	52.89	53.58
CDY38326	Canola	cytosol	54.86	53.44
KRH47067	Soybean	endoplasmic reticulum	53.36	53.36
KRH47066	Soybean	endoplasmic reticulum, nucleus	53.01	53.32
AT3G22400.1	Thale cress	cytosol	54.4	53.05
Solyc09g075870.1.1	Tomato	cytosol	52.43	53.04
KRH44097	Soybean	cytosol, endoplasmic reticulum	53.24	53.0
KRH13357	Soybean	endoplasmic reticulum	14.81	52.89
KRH23268	Soybean	endoplasmic reticulum	52.2	52.87
CDY46325	Canola	cytosol	53.82	52.72
KRH47525	Soybean	endoplasmic reticulum	52.66	52.42
KRH44094	Soybean	endoplasmic reticulum	52.55	52.36
Bra023829.1-P	Field mustard	cytosol	54.28	51.94
KRH23269	Soybean	endoplasmic reticulum	49.31	51.82
CDY64191	Canola	cytosol	54.17	51.6
KRH47069	Soybean	endoplasmic reticulum	26.85	50.99
VIT_06s0004g01580.t01	Wine grape	cytosol	19.56	50.45
KRH44092	Soybean	nucleus	48.38	48.77
KRG88464	Soybean	cytosol	25.69	48.68
KRH47064	Soybean	endoplasmic reticulum	31.37	47.54
HORVU5Hr1G055110.2	Barley	mitochondrion	18.63	45.61
HORVU1Hr1G054390.4	Barley	cytosol	44.33	45.38
HORVU3Hr1G047210.1	Barley	cytosol	11.0	43.78
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	25.23	42.66
CDY43490	Canola	cytosol, plasma membrane	56.94	40.9
Solyc01g099150.2.1	Tomato	nucleus	40.39	40.49
HORVU7Hr1G050680.1	Barley	peroxisome	31.6	39.91
HORVU2Hr1G115980.2	Barley	plastid	40.16	39.34
HORVU4Hr1G076570.6	Barley	cytosol, plastid	41.09	38.76
HORVU6Hr1G033600.1	Barley	plastid	38.77	37.39
HORVU2Hr1G115960.1	Barley	plastid	39.7	37.08
HORVU5Hr1G001180.1	Barley	plastid	38.77	35.98
HORVU6Hr1G000510.1	Barley	plastid	38.66	35.84
HORVU7Hr1G006320.4	Barley	plastid	37.04	34.52

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
EMBL:AK355935	ncoils:Coil	UniProt:F2CWD2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	EnsemblPlantsGene:HORVU5Hr1G093700	EnsemblPlants:HORVU5Hr1G093700.3	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant
InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF54	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0002004C4F	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:F2CWD2]

Coordinates

chrchr5H:+:592504014..592510252

Molecular Weight (calculated)

96650.6 Da

IEP (calculated)

6.721

GRAVY (calculated)

-0.290

Length

864 amino acids

Sequence
(BLAST)

001: MFGVGGIVSD LTGGLRGAHL KGSVVLMRKN ALDFNDFGAT VMDGVTELLG RGVTCQLISS TNVDHNNGGR GKVGAEANLE QWLLPTNLPF ITTGENKFAV
101: TFDWSVDKLG VPGAIIVKNN HASEFFLKTI TLDNVPGRGT IVFVANSWVY PQAKYRHNRV FFANDTYLPH QMPPALKPYR DDELRNLRGD DQQGPYLDHD
201: RVYRYDVYND LGDSRDVLGG SKDLPYPRRC RTGRKPSDSK PDHESRLLPL VQNVYVPRDE LFGHLKQSDF LGYTLKALVD GIIPAIRTYV DLSPGEFDSF
301: ADILKLYEGG IKLPNIPALE EVRKRFPLQL VKDLIPKGGD FLLKLPKPEI IKVDQKAWMT DEEFAREMLA GVNPMMIKRL TEFPPKSTLD PSKYGDHTST
401: MTEEHVAKSL EGLTVQQALA GNRLYIVDQH DNLMPFLIDI NNLDASFVYA TRTLLFLRGD GTLAPVAIEL SSPLIQGDLT TAKSAVYTPQ HAGVEGWIWQ
501: LAKAYASVND YGWHQLISHW LNTHAVMEPF VIATNRQLSV THPVYKLLHP HYRDTMNINA RARGLLINAG GVIEMTVFPH KHAMPMSSMV YKHWNFTEQA
601: LPADLIKRGM AVEDASSPHK VRLLIKDYPY ATDGLAVWDA IEQWVSDYLT IYYPNDGVLQ GDVELQAWWK EVREVGHGDL KDAAWWPKMQ TVAELIKACA
701: TIIWTGSALH AAVNFGQYPY SGYHPNKPSA SRRPMPVQGS EEYAELERDP EKAFIRTITS QFHALVGISL MEILSKHSSD EVYLGQHDTP AWTSDAKALE
801: AFKRFGAKLE GIEKQVVAMN SDPQLKNRTG PAKFPYMLLY PNTSDHTGQA EGLTARGIPN SISI

Best Arabidopsis Sequence Match ( AT3G22400.1 )
(BLAST)

001: MIHTDIAEIL CVKPKTTKKT KTMEEDVKKT TTMKIEGEVV VMKKNLLDFK DVMASLLDRV NELLGRRVSL HLISSHQPDP ANEKRGRLGK AAHLEKWVTK
101: IKTSVTAEET AFGVTFDWDE SMGPPAAFVI KNHHHSQFYL KSLTLRGFPD GEGGATAIHF ICNSWIYPNH RYRSDRVFFS NKAYLPSETP ELIKELREEE
201: LKNLRGNEKG GEFKEWDRVY DYAYYNDLGA PDKGPDSVRP VLGGSPELPY PRRGKTGRKS TKSDPKSESR LALLNLNIYV PRDERFSHVK FSDFLAYALK
301: SVTQVLVPEI ASVCDKTINE FDSFEDVFHL YDGSIKLANG HTISKLRDVI PWEMFRELVR NDGERFLKYP LPDILKESRS AWRTDEEFAR EMLAGLNPVV
401: ISRLQEFPPK SCLDSAKYGN QHSSIRTEHI ESNMNGLNVQ EALEQNKLYI LDHHDALMPY LTRINSTNTK TYATRTLLLL QADGTLKPLA IELSLPHAQG
501: ESYGSVSKVF TPAEKGVEGS VWQLAKAYAA VNDSGYHQLI SHWLQTHAVI EPFIIASNRQ LSVVHPIHKL LHPHFRDTMN INALARHVLI NSDGVLERTV
601: FPSRYAMEMS SSIYKNWVFT EQALPKDLLK RGVAVEDPNS DNGVKLLIED YPFAVDGLEI WSAIKTWVTE YCTFYYNNDK TVQTDTEIQS WWTELRTKGH
701: GDKRHESWWP SMQTRDDLIE TCTIIIWIAS ALHAAVNFGQ YPYAGFLPNR PTVSRRFMPE PGTDEYAELE EDADVAFLKT ITPQLQTLLG ISIIEILSMH
801: STDEIYLGQR DSPNWTADDE PLEAFKRFGK ELELIENNII RRNNDKRFKN RTGPVNIPYT LLYPNTTDYT REGGITGKGI PNSVSI

Arabidopsis Description

LOX5Linoleate 9S-lipoxygenase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.