Factsheet for Solyc01g099150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	63.92	63.92
VIT_06s0004g01580.t01	Wine grape	cytosol	23.78	61.19
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	56.38	56.45
Solyc01g099180.2.1	Tomato	cytosol	54.87	55.39
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	53.83	54.08
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	53.83	53.95
VIT_14s0128g00780.t01	Wine grape	cytosol	52.32	52.5
Os03t0700400-00	Rice	cytosol, plasma membrane	7.66	52.38
VIT_14s0128g00790.t01	Wine grape	cytosol	52.44	52.01
CDY70916	Canola	cytosol	30.05	51.39
KRH68548	Soybean	cytosol	50.0	50.23
Solyc01g099200.2.1	Tomato	cytosol, plastid	48.03	49.23
Bra021322.1-P	Field mustard	cytosol	48.49	48.77
KRH33939	Soybean	cytosol, endoplasmic reticulum	48.84	48.67
GSMUA_Achr1P22970_001	Banana	cytosol	46.98	47.87
AT1G55020.1	Thale cress	cytosol	47.45	47.61
Solyc01g099210.2.1	Tomato	cytosol	47.45	47.39
Solyc09g075860.2.1	Tomato	cytosol, nucleus	47.45	46.64
GSMUA_AchrUn_...	Banana	cytosol	45.48	45.85
GSMUA_Achr1P24370_001	Banana	cytosol	43.85	44.63
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	45.36	44.58
GSMUA_Achr6P25080_001	Banana	cytosol	40.02	44.52
Solyc09g075870.1.1	Tomato	cytosol	44.08	44.5
TraesCS4A01G359800.1	Wheat	cytosol	27.26	44.26
GSMUA_AchrUn_...	Banana	cytosol	39.91	43.88
Zm00001d033623_P003	Maize	cytosol	43.85	43.6
EER93611	Sorghum	cytosol	44.9	43.58
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	44.55	43.29
Os03t0699700-01	Rice	cytosol, plastid	43.16	43.11
EER93612	Sorghum	cytosol	43.27	43.07
Zm00001d033624_P001	Maize	cytosol	44.08	42.84
GSMUA_Achr6P25090_001	Banana	cytosol	41.65	42.84
TraesCS4A01G275900.1	Wheat	cytosol, unclear	43.5	42.71
GSMUA_Achr9P19250_001	Banana	plasma membrane	47.1	42.69
TraesCS5A01G378800.2	Wheat	cytosol	38.52	42.67
TraesCS4D01G035100.1	Wheat	cytosol	43.39	42.6
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	42.46	42.51
TraesCS4B01G037800.1	Wheat	cytosol	43.27	42.48
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	25.06	42.27
GSMUA_Achr6P25110_001	Banana	cytosol	38.75	42.07
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	42.81	42.03
Os03t0738600-01	Rice	plasma membrane, plastid	42.23	41.84
TraesCS4B01G037700.3	Wheat	cytosol, golgi	41.76	41.81
KXG37783	Sorghum	cytosol	43.27	41.77
TraesCS6A01G132200.1	Wheat	mitochondrion	41.88	41.35
TraesCS6A01G132500.1	Wheat	mitochondrion	41.88	41.35
TraesCS6B01G160400.1	Wheat	mitochondrion	41.88	41.35
TraesCS4D01G035200.1	Wheat	cytosol	39.68	41.25
TraesCS5B01G382400.1	Wheat	cytosol, golgi	40.95	41.24
TraesCS3B01G602500.1	Wheat	cytosol	42.11	41.2
EES04025	Sorghum	cytosol	41.42	41.13
TraesCS5B01G382600.1	Wheat	cytosol	41.07	41.12
TraesCS5B01G382300.1	Wheat	cytosol, unclear	41.18	41.09
HORVU5Hr1G093770.1	Barley	cytosol	41.07	41.02
Zm00001d042541_P002	Maize	cytosol	42.0	40.95
TraesCS5A01G378700.1	Wheat	cytosol	40.95	40.86
TraesCS3B01G605700.1	Wheat	cytosol	41.88	40.79
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	40.84	40.74
TraesCS6D01G122000.1	Wheat	cytosol	14.62	40.65
TraesCS5A01G378900.1	Wheat	cytosol	40.6	40.51
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	40.49	40.39
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	22.51	39.75
TraesCS5A01G379000.1	Wheat	nucleus, unclear	35.38	39.61
EES04028	Sorghum	cytosol	39.91	39.4
Solyc09g055900.2.1	Tomato	cytosol	21.11	39.39
TraesCS5D01G388800.1	Wheat	cytosol	40.95	39.35
Os11t0575600-01	Rice	mitochondrion	39.56	39.29
Zm00001d042540_P008	Maize	cytosol	40.26	38.9
Solyc01g009680.2.1	Tomato	plastid	19.72	38.37
TraesCS5D01G513100.1	Wheat	cytosol	38.28	38.02
HORVU5Hr1G117110.1	Barley	cytosol	38.86	37.77
TraesCS4A01G275800.1	Wheat	cytosol	9.98	35.98
TraesCS6B01G395700.1	Wheat	cytosol	33.87	35.96
TraesCS6D01G121900.1	Wheat	mitochondrion	18.33	35.35
CDY43490	Canola	cytosol, plasma membrane	48.26	34.58
Solyc01g006540.2.1	Tomato	plastid	31.9	30.69
Solyc05g014790.2.1	Tomato	plastid	32.25	30.52
Solyc03g122340.2.1	Tomato	cytosol	31.9	30.29
Solyc01g006560.2.1	Tomato	plastid	31.09	29.71
Solyc12g011040.1.1	Tomato	nucleus, plastid	30.51	29.48
Solyc09g055890.2.1	Tomato	cytosol	10.44	24.26
GSMUA_Achr6P25100_001	Banana	cytosol	39.44	2.83

Protein Annotations

Gene3D:1.20.245.10	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872
GO:GO:0051213	GO:GO:0055114	InterPro:IPR013819	InterPro:IPR027433	UniProt:K4B0V2	InterPro:LipOase
InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3
PFAM:PF00305	PFAM:PF13668	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF91	SUPFAM:SSF48484	EnsemblPlantsGene:Solyc01g099150.2	EnsemblPlants:Solyc01g099150.2.1
UniParc:UPI0002768B72	:	:	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:K4B0V2]

Coordinates

chr1:+:89463670..89469398

Molecular Weight (calculated)

97487.8 Da

IEP (calculated)

7.017

GRAVY (calculated)

-0.268

Length

862 amino acids

Sequence
(BLAST)

001: MVLSEILFMS FSYATNTNCP SGYPKKGVGV EKEDVDKMQF AVNLEFLEAE YFLWASYGFG LDEVAPNLPM SGPPPIGARK ANLDQLTNNI IMEFANQEVG
101: HLRSLNSTVG VFPRPLLDLS AKHFAKIFDD AFGHKLVPPF DPYRDSLSYM LSCYVIPYVG LVGYVGTNPN INGYETKRLL AGLLGVESGQ DAVIRMYLYE
201: RAAELVSPYQ YTVADFTSRI SGLRNKLGKC GIKDEGVYVQ SPLGAENRTR SNVLSANFGS LSYKRTPAEI LRIVYGSGDE HVPGGFYPKG ANGKIYKKCL
301: RCYLREHIYI YSKYKSDRIF FANQAYLPSE TPELLRKYRE NELVALRGDG TGKLEEWDRV YDYAYSMTWV IQTKYPYPRR GRTGREPTKT DPNTESRIPL
401: LMSLDIYVPR DERFGHVKMS DFLTFALKSI SQLLLPEFKA LFDSTPNEFD SFADVLKIYE GGIKLPQGPL FKAIVDAIPL EILKQLLSTD GEGLLKYPIP
501: QVIQEDKSSW RTDEEFGREM LAGVNPVVIS RLQAIKTNRL FILNHHDILM PYVRRINTTT NTKMYASRTL LFLQGDGTLK PLAIELSLPH PDGNQYGAVS
601: KVFTPSDQGV EGSIWQLAKA FAAVNDSGVH QLVSHWLNTH AVMEPFVIAT NRRLSVLHPI HKLLLPHFRD TMNINALARQ TLINGGGLLE FTVFPAKYSM
701: QLSSVIYKDW IFPEQALPAD VIKRGVAVED SNSPHGVRLL IQDYPYAVDG LEIWSAIKSW VTEYCNYYYK SDDAVQKDAE LQAWWKELRE EGHGDKKDEP
801: WWPKMQSVQE LIDSCTITIW IASALHAAVN FGQYPYAGYL PNRPTLSRKF MPEPGSAEEK SR

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.