Factsheet for Os03t0738600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0700400-00	Rice	cytosol, plasma membrane	12.76	88.1
TraesCS5A01G378800.2	Wheat	cytosol	68.97	77.12
HORVU5Hr1G093770.1	Barley	cytosol	76.44	77.06
TraesCS5B01G382400.1	Wheat	cytosol, golgi	75.75	76.99
TraesCS5B01G382600.1	Wheat	cytosol	76.09	76.89
EES04028	Sorghum	cytosol	77.01	76.75
TraesCS5B01G382300.1	Wheat	cytosol, unclear	76.21	76.74
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	76.09	76.62
TraesCS5A01G378900.1	Wheat	cytosol	75.98	76.5
EES04025	Sorghum	cytosol	76.21	76.38
TraesCS5A01G378700.1	Wheat	cytosol	75.75	76.27
Zm00001d042541_P002	Maize	cytosol	77.47	76.24
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	75.17	75.69
Zm00001d042540_P008	Maize	cytosol	76.9	75.0
TraesCS4A01G359800.1	Wheat	cytosol	45.52	74.58
Os03t0699700-01	Rice	cytosol, plastid	73.56	74.16
TraesCS5D01G388800.1	Wheat	cytosol	76.32	74.02
TraesCS5A01G379000.1	Wheat	nucleus, unclear	65.17	73.64
TraesCS5D01G513100.1	Wheat	cytosol	68.97	69.12
HORVU5Hr1G117110.1	Barley	cytosol	68.85	67.53
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	67.7	67.16
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	35.29	62.91
CDY70916	Canola	cytosol	36.09	62.3
KRH35534	Soybean	cytosol	31.95	62.05
GSMUA_Achr1P22970_001	Banana	cytosol	60.11	61.82
PGSC0003DMT400063654	Potato	cytosol	34.25	60.69
VIT_14s0128g00780.t01	Wine grape	cytosol	58.28	59.02
KRH16725	Soybean	cytosol	15.63	58.87
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	58.16	58.7
KRH62399	Soybean	cytosol, endoplasmic reticulum	15.86	58.47
PGSC0003DMT400054145	Potato	cytosol	57.47	58.28
PGSC0003DMT400063446	Potato	cytosol	53.68	58.08
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	57.36	58.02
PGSC0003DMT400028158	Potato	cytosol	57.47	58.0
Bra021322.1-P	Field mustard	cytosol	57.13	57.99
Os11t0575600-01	Rice	mitochondrion	57.7	57.83
VIT_14s0128g00790.t01	Wine grape	cytosol	57.7	57.77
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	57.13	57.72
KRH62403	Soybean	cytosol, endoplasmic reticulum	14.94	57.27
KRH33939	Soybean	cytosol, endoplasmic reticulum	56.9	57.23
AT1G55020.1	Thale cress	cytosol	56.44	57.16
KRH68548	Soybean	cytosol	56.32	57.11
KRH57987	Soybean	cytosol	16.9	56.98
KRG91271	Soybean	cytosol	56.09	56.88
PGSC0003DMT400063477	Potato	cytosol	55.75	56.66
Solyc01g099200.2.1	Tomato	cytosol, plastid	54.37	56.24
Solyc01g099210.2.1	Tomato	cytosol	55.75	56.2
PGSC0003DMT400081370	Potato	cytosol	56.55	56.1
Solyc09g075860.2.1	Tomato	cytosol, nucleus	56.44	55.99
VIT_05s0020g03170.t01	Wine grape	cytosol	56.32	55.94
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	54.94	55.71
Solyc01g099180.2.1	Tomato	cytosol	54.6	55.62
PGSC0003DMT400063469	Potato	cytosol	53.79	55.52
KRH23266	Soybean	cytosol	52.41	55.21
PGSC0003DMT400063461	Potato	cytosol	44.02	55.19
CDY46325	Canola	cytosol	55.86	55.1
KRH44090	Soybean	endoplasmic reticulum	54.14	54.77
KRH23265	Soybean	endoplasmic reticulum, nucleus	54.48	54.73
Bra039948.1-P	Field mustard	cytosol	55.75	54.68
KRH44093	Soybean	endoplasmic reticulum	53.1	54.61
CDY38326	Canola	cytosol	55.63	54.57
AT3G22400.1	Thale cress	cytosol	55.52	54.51
KRH10050	Soybean	endoplasmic reticulum	53.68	54.49
PGSC0003DMT400063452	Potato	cytosol	50.0	54.44
KRH10051	Soybean	endoplasmic reticulum, nucleus	53.45	54.32
VIT_06s0004g01580.t01	Wine grape	cytosol	20.8	54.03
KRH44095	Soybean	endoplasmic reticulum	53.56	53.81
KRH47066	Soybean	endoplasmic reticulum, nucleus	53.1	53.78
Bra023829.1-P	Field mustard	cytosol	55.63	53.6
KRH10053	Soybean	endoplasmic reticulum	52.3	53.34
KRH23268	Soybean	endoplasmic reticulum	52.3	53.34
Solyc09g075870.1.1	Tomato	cytosol	52.3	53.28
KRH47522	Soybean	endoplasmic reticulum, nucleus	52.87	53.18
CDY64191	Canola	cytosol	55.4	53.14
KRH44097	Soybean	cytosol, endoplasmic reticulum	52.76	52.88
KRH44094	Soybean	endoplasmic reticulum	52.53	52.71
KRH23269	Soybean	endoplasmic reticulum	49.77	52.68
KRH47525	Soybean	endoplasmic reticulum	52.18	52.3
KRH47067	Soybean	endoplasmic reticulum	51.84	52.2
KRH13357	Soybean	endoplasmic reticulum	14.48	52.07
KRH47069	Soybean	endoplasmic reticulum	26.67	50.99
KRG88464	Soybean	cytosol	26.44	50.44
KRH44092	Soybean	nucleus	48.16	48.89
KRH47064	Soybean	endoplasmic reticulum	31.72	48.42
Os12t0559934-00	Rice	cytosol	10.34	46.15
Os05t0304600-01	Rice	plastid	43.33	44.51
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	25.75	43.84
Os04t0447100-01	Rice	cytosol	39.43	43.09
Solyc01g099150.2.1	Tomato	nucleus	41.84	42.23
CDY43490	Canola	cytosol, plasma membrane	57.01	41.23
Os03t0179900-01	Rice	plastid	41.15	39.0
Os08t0508800-01	Rice	nucleus, plasma membrane	40.57	38.2
Os08t0509100-01	Rice	nucleus	40.69	37.62
Os02t0194700-01	Rice	plasma membrane	38.97	36.61
Os12t0559200-01	Rice	plastid	37.82	35.68
Os12t0560200-00	Rice	cytosol	4.02	35.35

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	EntrezGene:4334049
MapMan:50.1.12	ProteinID:AAP44707.1	ProteinID:ABF98775.1	EMBL:AK073529	ProteinID:BAF13126.1	ProteinID:BAS86291.1
ProteinID:EAZ28520.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607
GO:GO:0009611	GO:GO:0009987	GO:GO:0016165	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408
GO:GO:0046872	GO:GO:0051213	GO:GO:0051707	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	EnsemblPlantsGene:Os03g0738600	EnsemblPlants:Os03t0738600-01	UniProt:P29250	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF54	SMART:SM00308
SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000019C5D0	EMBL:X64396	RefSeq:XP_015629809.1	SEG:seg

Description

LIPOXYGENASE L2Lipoxygenase, Seed germination and longevity (Os03t0738600-01)

Coordinates

chr3:+:30315456..30318959

Molecular Weight (calculated)

97189.1 Da

IEP (calculated)

6.596

GRAVY (calculated)

-0.285

Length

870 amino acids

Sequence
(BLAST)

001: MLGGIIGGLT GNKNARLKGS LVLMRKNALD INDFGATVID GISEFLGRGV TCQLVSSSLV DPNNGNRGRV GTEASLEQWL TSLPSLTTGE SKFGVTFEWE
101: VEKMGIPGAI IVKNNHAAEF FLKTITLDNV PGHGAVVFVA NSWIYPASKY RYNRVFFSND TSLPSKMPAA LKPYRDDELR NLRGDDQQGP YQEHDRVYRY
201: DVYNDLGEPD SGNPRPVLGG SPDRPYPRRG RTGRKPTKTD PTAESRLSLL ENIYVPRDER FGHLKMADFL GYSIKALVDG IVPAIRTYVD LTPGEFDSFK
301: DILKLYEGGL KLPSIPALEE LRKRFPLQLV KDLIPAGGDY LLKLPMPHVI REDKKAWMTD DEFAREILAG VNPMVIARLT EFPPRSRLDP ARYGDQTSTI
401: TAAHVERGLE GLTVQQAIDG NLLYVVDHHD HFMPYLLDIN SLDDNFIYAT RTLLFLRGDG TLAPLAIELS LPHLQDDGLI TARSTVYTPA ARGGTGAGAV
501: EWWVWQLAKA YVNVNDYCWH QLISHWLNTH AVMEPFVIAT NRQLSVAHPV HKLLLPHYRD TMTINALARQ TLINGGGIFE MTVFPRKHAL AMSSAFYKDW
601: SFADQALPDD LVKRGVAVPD PASPYKVRLL IEDYPYANDG LAVWHAIEQW ATEYLAIYYP NDGVLQGDAE LQAWWKEVRE VGHGDIKDAT WWPEMKTVAE
701: LVKACATIIW IGSALHAAVN FGQYPYAGYL PNRPSVSRRP MPEPGTKEYD ELARDPEKVF VRTITKQMQA IVGISLLEIL SKHSSDEVYL GQRDTPEWTS
801: DAKALEAFKR FGARLTEIES RVVAMNKDPH RKNRVGPTNF PYTLLYPNTS DLKGDAAGLS ARGIPNSISI

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.